RNA–Protein interactions for RNA: ENST00000460235.1

HDAC4-206, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 343 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-206ENST00000460235 PPP3CAQ08209 521 aa13.28□□□□□ -0.28
HDAC4-206ENST00000460235 GSE1Q14687 1217 aa13.28□□□□□ -0.28
HDAC4-206ENST00000460235 UPP1Q16831 310 aa13.28□□□□□ -0.28
HDAC4-206ENST00000460235 ZNF699Q32M78 642 aa13.28□□□□□ -0.28
HDAC4-206ENST00000460235 C9orf50Q5SZB4 431 aa13.28□□□□□ -0.28
HDAC4-206ENST00000460235 C15orf39Q6ZRI6 1047 aa13.28□□□□□ -0.28
HDAC4-206ENST00000460235 DPH6Q7L8W6 267 aa13.28□□□□□ -0.28
HDAC4-206ENST00000460235 METTL23Q86XA0 190 aa13.28□□□□□ -0.28
HDAC4-206ENST00000460235 COLGALT2Q8IYK4 626 aa13.28□□□□□ -0.28
HDAC4-206ENST00000460235 C1orf127Q8N9H9 656 aa13.28□□□□□ -0.28
HDAC4-206ENST00000460235 EHBP1Q8NDI1 1231 aa13.28□□□□□ -0.28
HDAC4-206ENST00000460235 OR5B17Q8NGF7 314 aa13.28□□□□□ -0.28
HDAC4-206ENST00000460235 SP7Q8TDD2 431 aaPredicted RBP13.28□□□□□ -0.28
HDAC4-206ENST00000460235 JAKMIP2Q96AA8 810 aa13.28□□□□□ -0.28
HDAC4-206ENST00000460235 TMEM169Q96HH4 297 aa13.28□□□□□ -0.28
HDAC4-206ENST00000460235 OXCT2Q9BYC2 517 aaPredicted RBP13.28□□□□□ -0.28
HDAC4-206ENST00000460235 NRDE2Q9H7Z3 1164 aa13.28□□□□□ -0.28
HDAC4-206ENST00000460235 VRTNQ9H8Y1 702 aa13.28□□□□□ -0.28
HDAC4-206ENST00000460235 RTN4Q9NQC3 1192 aaKnown RBP13.28□□□□□ -0.28
HDAC4-206ENST00000460235 MIOSQ9NXC5 875 aa13.28□□□□□ -0.28
HDAC4-206ENST00000460235 SPG21Q9NZD8 308 aa13.28□□□□□ -0.28
HDAC4-206ENST00000460235 GCNT4Q9P109 453 aa13.28□□□□□ -0.28
HDAC4-206ENST00000460235 SSX2IPQ9Y2D8 614 aa13.28□□□□□ -0.28
HDAC4-206ENST00000460235 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.28□□□□□ -0.28
HDAC4-206ENST00000460235 PIRO00625 290 aa13.27□□□□□ -0.29
HDAC4-206ENST00000460235 HUS1O60921 280 aa13.27□□□□□ -0.29
HDAC4-206ENST00000460235 KIF4AO95239 1232 aa13.27□□□□□ -0.29
HDAC4-206ENST00000460235 BCAR1P56945 870 aa13.27□□□□□ -0.29
HDAC4-206ENST00000460235 SMAD3P84022 425 aaKnown RBP13.27□□□□□ -0.29
HDAC4-206ENST00000460235 MIIPQ5JXC2 388 aa13.27□□□□□ -0.29
HDAC4-206ENST00000460235 TDRD10Q5VZ19 366 aaKnown RBP13.27□□□□□ -0.29
HDAC4-206ENST00000460235 LMBRD2Q68DH5 695 aaPredicted RBP13.27□□□□□ -0.29
HDAC4-206ENST00000460235 KCNT2Q6UVM3 1135 aa13.27□□□□□ -0.29
HDAC4-206ENST00000460235 DSTYKQ6XUX3 929 aa13.27□□□□□ -0.29
HDAC4-206ENST00000460235 GAS2L3Q86XJ1 694 aa13.27□□□□□ -0.29
HDAC4-206ENST00000460235 APPL2Q8NEU8 664 aa13.27□□□□□ -0.29
HDAC4-206ENST00000460235 ZNF397Q8NF99 534 aaPredicted RBP13.27□□□□□ -0.29
HDAC4-206ENST00000460235 NEK11Q8NG66 645 aa13.27□□□□□ -0.29
HDAC4-206ENST00000460235 PLEKHO2Q8TD55 490 aa13.27□□□□□ -0.29
HDAC4-206ENST00000460235 ZNF516Q92618 1163 aa13.27□□□□□ -0.29
HDAC4-206ENST00000460235 CLP1Q92989 425 aaKnown RBP13.27□□□□□ -0.29
HDAC4-206ENST00000460235 C18orf25Q96B23 403 aaPredicted RBP13.27□□□□□ -0.29
HDAC4-206ENST00000460235 ERGIC2Q96RQ1 377 aa13.27□□□□□ -0.29
HDAC4-206ENST00000460235 HSD3B7Q9H2F3 369 aa13.27□□□□□ -0.29
HDAC4-206ENST00000460235 CYP3A43Q9HB55 503 aa13.27□□□□□ -0.29
HDAC4-206ENST00000460235 IFNKQ9P0W0 207 aa13.27□□□□□ -0.29
HDAC4-206ENST00000460235 TUBGCP4Q9UGJ1 667 aa13.27□□□□□ -0.29
HDAC4-206ENST00000460235 SF3B1O75533 1304 aaKnown RBP eCLIP13.27□□□□□ -0.29
HDAC4-206ENST00000460235 CASTOR2A6NHX0 329 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 KPNA7A9QM74 516 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 NRP1O14786 923 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 ASS1P00966 412 aaKnown RBP13.26□□□□□ -0.29
HDAC4-206ENST00000460235 GALTP07902 379 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 CCDC172P0C7W6 258 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 ODC1P11926 461 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 CLCNKBP51801 687 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 MFAP3P55082 362 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 LILRA4P59901 499 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 CREMQ03060 361 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 UBE3AQ05086 875 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 TRIM14Q14142 442 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 NR1I3Q14994 352 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 RALGAPA2Q2PPJ7 1873 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 WDR72Q3MJ13 1102 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 C1orf220Q5T0J3 134 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 PRPF38BQ5VTL8 546 aaKnown RBP13.26□□□□□ -0.29
HDAC4-206ENST00000460235 CHRDL2Q6WN34 429 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 TMEM86AQ8N2M4 240 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 TAS1R2Q8TE23 839 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 TGS1Q96RS0 853 aaKnown RBP13.26□□□□□ -0.29
HDAC4-206ENST00000460235 C11orf84Q9BUA3 381 aaPredicted RBP13.26□□□□□ -0.29
HDAC4-206ENST00000460235 EDEM3Q9BZQ6 932 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 NUCKS1Q9H1E3 243 aaKnown RBP13.26□□□□□ -0.29
HDAC4-206ENST00000460235 SLC28A3Q9HAS3 691 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 GRPEL1Q9HAV7 217 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 RC3H2Q9HBD1 1191 aaKnown RBP13.26□□□□□ -0.29
HDAC4-206ENST00000460235 PLCB1Q9NQ66 1216 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 GDAP2Q9NXN4 497 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 ADAM28Q9UKQ2 775 aa13.26□□□□□ -0.29
HDAC4-206ENST00000460235 SYN3O14994 580 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 LPXNO60711 386 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 DDHD2O94830 711 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 BMPR1AP36894 532 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 MYL6P60660 151 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 NOP14P78316 857 aaKnown RBP13.25□□□□□ -0.29
HDAC4-206ENST00000460235 NAB2Q15742 525 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 TSR1Q2NL82 804 aaKnown RBP13.25□□□□□ -0.29
HDAC4-206ENST00000460235 CBWD6Q4V339 395 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 EPC2Q52LR7 807 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 CBWD3Q5JTY5 395 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 CBWD5Q5RIA9 395 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 KIAA1841Q6NSI8 718 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 ZNF280BQ86YH2 543 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 GPR65Q8IYL9 337 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 THEM5Q8N1Q8 247 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 TOP6BLQ8N6T0 577 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 COLGALT1Q8NBJ5 622 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 MRFAP1L1Q96HT8 127 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 MMS19Q96T76 1030 aa13.25□□□□□ -0.29
HDAC4-206ENST00000460235 NIF3L1Q9GZT8 377 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms