RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 TJAP1Q5JTD0 557 aa20.2■□□□□ 0.82
SHH-204ENST00000441114 LMBRD2Q68DH5 695 aaPredicted RBP20.2■□□□□ 0.82
SHH-204ENST00000441114 PTCRAQ6ISU1 281 aaPredicted RBP20.2■□□□□ 0.82
SHH-204ENST00000441114 DSTYKQ6XUX3 929 aa20.2■□□□□ 0.82
SHH-204ENST00000441114 PPFIBP1Q86W92 1011 aa20.2■□□□□ 0.82
SHH-204ENST00000441114 GOLGA5Q8TBA6 731 aa20.2■□□□□ 0.82
SHH-204ENST00000441114 LNX1Q8TBB1 728 aaPredicted RBP20.2■□□□□ 0.82
SHH-204ENST00000441114 SLC22A17Q8WUG5 538 aa20.2■□□□□ 0.82
SHH-204ENST00000441114 CASP10Q92851 521 aa20.2■□□□□ 0.82
SHH-204ENST00000441114 KCTD10Q9H3F6 313 aa20.2■□□□□ 0.82
SHH-204ENST00000441114 RXFP1Q9HBX9 757 aa20.2■□□□□ 0.82
SHH-204ENST00000441114 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.2■□□□□ 0.82
SHH-204ENST00000441114 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.2■□□□□ 0.82
SHH-204ENST00000441114 SPDYE4A6NLX3 237 aa20.19■□□□□ 0.82
SHH-204ENST00000441114 SPATA31D3P0C874 917 aa20.19■□□□□ 0.82
SHH-204ENST00000441114 CLCN4P51793 760 aa20.19■□□□□ 0.82
SHH-204ENST00000441114 C9orf57Q5W0N0 161 aa20.19■□□□□ 0.82
SHH-204ENST00000441114 ANKRD54Q6NXT1 300 aa20.19■□□□□ 0.82
SHH-204ENST00000441114 SPATA31D4Q6ZUB0 917 aa20.19■□□□□ 0.82
SHH-204ENST00000441114 CACTINQ8WUQ7 758 aaKnown RBP20.19■□□□□ 0.82
SHH-204ENST00000441114 PIK3R5Q8WYR1 880 aa20.19■□□□□ 0.82
SHH-204ENST00000441114 MSLNLQ96KJ4 702 aa20.19■□□□□ 0.82
SHH-204ENST00000441114 GSDMAQ96QA5 445 aa20.19■□□□□ 0.82
SHH-204ENST00000441114 SCN1AP35498 2009 aa20.19■□□□□ 0.82
SHH-204ENST00000441114 PDXKO00764 312 aa20.18■□□□□ 0.82
SHH-204ENST00000441114 CALUO43852 315 aaPredicted RBP20.18■□□□□ 0.82
SHH-204ENST00000441114 TMEM191BP0C7N4 346 aa20.18■□□□□ 0.82
SHH-204ENST00000441114 BMP1P13497 986 aa20.18■□□□□ 0.82
SHH-204ENST00000441114 CREMQ03060 361 aa20.18■□□□□ 0.82
SHH-204ENST00000441114 SURF1Q15526 300 aa20.18■□□□□ 0.82
SHH-204ENST00000441114 ZNF658Q5TYW1 1059 aaPredicted RBP20.18■□□□□ 0.82
SHH-204ENST00000441114 TMEM184AQ6ZMB5 413 aa20.18■□□□□ 0.82
SHH-204ENST00000441114 NT5DC4Q86YG4 428 aa20.18■□□□□ 0.82
SHH-204ENST00000441114 C12orf56Q8IXR9 622 aa20.18■□□□□ 0.82
SHH-204ENST00000441114 GUF1Q8N442 669 aaKnown RBP20.18■□□□□ 0.82
SHH-204ENST00000441114 C12orf76Q8N812 135 aaPredicted RBP20.18■□□□□ 0.82
SHH-204ENST00000441114 CCDC127Q96BQ5 260 aa20.18■□□□□ 0.82
SHH-204ENST00000441114 SUSD3Q96L08 255 aa20.18■□□□□ 0.82
SHH-204ENST00000441114 FBXL18Q96ME1 805 aa20.18■□□□□ 0.82
SHH-204ENST00000441114 FNIP2Q9P278 1114 aa20.18■□□□□ 0.82
SHH-204ENST00000441114 PIRO00625 290 aa20.17■□□□□ 0.82
SHH-204ENST00000441114 NR3C1P04150 777 aa20.17■□□□□ 0.82
SHH-204ENST00000441114 ITGB3P05106 788 aa20.17■□□□□ 0.82
SHH-204ENST00000441114 KRT19P08727 400 aa20.17■□□□□ 0.82
SHH-204ENST00000441114 DLATP10515 647 aaKnown RBP20.17■□□□□ 0.82
SHH-204ENST00000441114 IL9P15248 144 aa20.17■□□□□ 0.82
SHH-204ENST00000441114 CAMK4Q16566 473 aa20.17■□□□□ 0.82
SHH-204ENST00000441114 VARS2Q5ST30 1063 aaKnown RBP20.17■□□□□ 0.82
SHH-204ENST00000441114 CEP135Q66GS9 1140 aa20.17■□□□□ 0.82
SHH-204ENST00000441114 PDXDC1Q6P996 788 aa20.17■□□□□ 0.82
SHH-204ENST00000441114 ELOA2Q8IYF1 753 aaPredicted RBP20.17■□□□□ 0.82
SHH-204ENST00000441114 GPR65Q8IYL9 337 aa20.17■□□□□ 0.82
SHH-204ENST00000441114 CSGALNACT2Q8N6G5 542 aa20.17■□□□□ 0.82
SHH-204ENST00000441114 ANKRD36BP1Q96IX9 119 aa20.17■□□□□ 0.82
SHH-204ENST00000441114 GBP4Q96PP9 640 aa20.17■□□□□ 0.82
SHH-204ENST00000441114 FNBP1Q96RU3 617 aa20.17■□□□□ 0.82
SHH-204ENST00000441114 POP1Q99575 1024 aaKnown RBP20.17■□□□□ 0.82
SHH-204ENST00000441114 CLSTN3Q9BQT9 956 aa20.17■□□□□ 0.82
SHH-204ENST00000441114 MTMR12Q9C0I1 747 aa20.17■□□□□ 0.82
SHH-204ENST00000441114 AGAP1Q9UPQ3 857 aa20.17■□□□□ 0.82
SHH-204ENST00000441114 TIMM13Q9Y5L4 95 aaPredicted RBP20.17■□□□□ 0.82
SHH-204ENST00000441114 MTCL1Q9Y4B5 1905 aaKnown RBP20.17■□□□□ 0.82
SHH-204ENST00000441114 ANO9A1A5B4 782 aa20.16■□□□□ 0.82
SHH-204ENST00000441114 GRXCR2A6NFK2 248 aa20.16■□□□□ 0.82
SHH-204ENST00000441114 SYN3O14994 580 aa20.16■□□□□ 0.82
SHH-204ENST00000441114 SPTLC1O15269 473 aa20.16■□□□□ 0.82
SHH-204ENST00000441114 ADAM12O43184 909 aa20.16■□□□□ 0.82
SHH-204ENST00000441114 MBTPS2O43462 519 aa20.16■□□□□ 0.82
SHH-204ENST00000441114 GLUD1P00367 558 aa20.16■□□□□ 0.82
SHH-204ENST00000441114 TNNI1P19237 187 aa20.16■□□□□ 0.82
SHH-204ENST00000441114 POLR2BP30876 1174 aaKnown RBP20.16■□□□□ 0.82
SHH-204ENST00000441114 OR1D2P34982 312 aa20.16■□□□□ 0.82
SHH-204ENST00000441114 PRCPP42785 496 aa20.16■□□□□ 0.82
SHH-204ENST00000441114 ARPP19P56211 112 aa20.16■□□□□ 0.82
SHH-204ENST00000441114 LILRA4P59901 499 aa20.16■□□□□ 0.82
SHH-204ENST00000441114 CYP24A1Q07973 514 aa20.16■□□□□ 0.82
SHH-204ENST00000441114 RARS2Q5T160 578 aaKnown RBP20.16■□□□□ 0.82
SHH-204ENST00000441114 SCARA3Q6AZY7 606 aa20.16■□□□□ 0.82
SHH-204ENST00000441114 SYCE2Q6PIF2 218 aa20.16■□□□□ 0.82
SHH-204ENST00000441114 ANKS3Q6ZW76 656 aa20.16■□□□□ 0.82
SHH-204ENST00000441114 OR5B17Q8NGF7 314 aa20.16■□□□□ 0.82
SHH-204ENST00000441114 INTS13Q9NVM9 706 aa20.16■□□□□ 0.82
SHH-204ENST00000441114 MAN1B1Q9UKM7 699 aa20.16■□□□□ 0.82
SHH-204ENST00000441114 PCDHB8Q9UN66 801 aa20.16■□□□□ 0.82
SHH-204ENST00000441114 PTPRJQ12913 1337 aa20.16■□□□□ 0.82
SHH-204ENST00000441114 BIN1O00499 593 aa20.15■□□□□ 0.82
SHH-204ENST00000441114 TGM5O43548 720 aa20.15■□□□□ 0.82
SHH-204ENST00000441114 TNNC2P02585 160 aa20.15■□□□□ 0.82
SHH-204ENST00000441114 CASP4P49662 377 aa20.15■□□□□ 0.82
SHH-204ENST00000441114 TAF6P49848 677 aa20.15■□□□□ 0.82
SHH-204ENST00000441114 SMAD4Q13485 552 aaKnown RBP20.15■□□□□ 0.82
SHH-204ENST00000441114 PSMD6Q15008 389 aa20.15■□□□□ 0.82
SHH-204ENST00000441114 PUS10Q3MIT2 529 aaKnown RBP20.15■□□□□ 0.82
SHH-204ENST00000441114 RSPO2Q6UXX9 243 aaPredicted RBP20.15■□□□□ 0.82
SHH-204ENST00000441114 CLEC17AQ6ZS10 378 aa20.15■□□□□ 0.82
SHH-204ENST00000441114 C1orf127Q8N9H9 656 aa20.15■□□□□ 0.82
SHH-204ENST00000441114 APPL2Q8NEU8 664 aa20.15■□□□□ 0.82
SHH-204ENST00000441114 SPATA20Q8TB22 786 aa20.15■□□□□ 0.82
SHH-204ENST00000441114 SENP8Q96LD8 212 aa20.15■□□□□ 0.82
SHH-204ENST00000441114 MAN1C1Q9NR34 630 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms