RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 TLR7Q9NYK1 1049 aaKnown RBP7.52□□□□□ -1.21
VPS53-204ENST00000437048 CARD8Q9Y2G2 431 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 CEP170Q5SW79 1584 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 KCNV1Q6PIU1 500 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 ERGIC2Q96RQ1 377 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 CALN1Q9BXU9 219 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 ADNPQ9H2P0 1102 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 IQGAP3Q86VI3 1631 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 TBX3O15119 743 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 ANP32DO95626 131 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 HSD17B4P51659 736 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 USP11P51784 963 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 ITGADQ13349 1161 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 FAM83EQ2M2I3 478 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 STRA8Q7Z7C7 330 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 CLEC4FQ8N1N0 589 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 PGM2Q96G03 612 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 MAPK8IP1Q9UQF2 711 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 NOD1Q9Y239 953 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 LEMD3Q9Y2U8 911 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 SH3GLB1Q9Y371 365 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 MAGEB16A2A368 324 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 WWP2O00308 870 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 SCRN3Q0VDG4 424 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 TTLL12Q14166 644 aaPredicted RBP7.52□□□□□ -1.21
VPS53-204ENST00000437048 KCTD19Q17RG1 926 aaPredicted RBP7.52□□□□□ -1.21
VPS53-204ENST00000437048 C11orf57Q6ZUT1 292 aaPredicted RBP7.52□□□□□ -1.21
VPS53-204ENST00000437048 UNC45AQ9H3U1 944 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 C17orf75Q9HAS0 396 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 RAB21Q9UL25 225 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 RPL5P46777 297 aaKnown RBP7.52□□□□□ -1.21
VPS53-204ENST00000437048 RPL26P61254 145 aaKnown RBP7.52□□□□□ -1.21
VPS53-204ENST00000437048 HECTD3Q5T447 861 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 FOXR2Q6PJQ5 311 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 RHPN2Q8IUC4 686 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 SLC22A9Q8IVM8 553 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 TTLL11Q8NHH1 800 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 SLC30A5Q8TAD4 765 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 ACTRT1Q8TDG2 376 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 PPP1R36Q96LQ0 422 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 AGBL1Q96MI9 1066 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 DYRK4Q9NR20 520 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 MLH3Q9UHC1 1453 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 CCDC162PA2VCL2 907 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 KRT19P08727 400 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 CYP2C8P10632 490 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 SDC4P31431 198 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 CASP2P42575 452 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 ARPC4P59998 168 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 TRIQKQ629K1 86 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 SMARCAD1Q9H4L7 1026 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 FAM153AQ9UHL3 310 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 VAV3Q9UKW4 847 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 JAK2O60674 1132 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 FGAP02671 866 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 OSBPL10Q9BXB5 764 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 SMYD2Q9NRG4 433 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 G3BP2Q9UN86 482 aaKnown RBP7.52□□□□□ -1.21
VPS53-204ENST00000437048 TRPM1Q7Z4N2 1603 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 NAB2Q15742 525 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 CYP4Z2PQ8N1L4 340 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 FAF2Q96CS3 445 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 PAGE5Q96GU1 130 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 ILKAPQ9H0C8 392 aaPredicted RBP7.52□□□□□ -1.21
VPS53-204ENST00000437048 ATXN10Q9UBB4 475 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 JAG2Q9Y219 1238 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 PCDHA1Q9Y5I3 950 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 USP32Q8NFA0 1604 aa7.52□□□□□ -1.21
VPS53-204ENST00000437048 AKAP10O43572 662 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 SLC34A1Q06495 639 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.51□□□□□ -1.21
VPS53-204ENST00000437048 KLHL25Q9H0H3 589 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 FAM200BP0CF97 657 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 GZMAP12544 262 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 ACTR2P61160 394 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 PREPLQ4J6C6 727 aaPredicted RBP7.51□□□□□ -1.21
VPS53-204ENST00000437048 C6orf10Q5SRN2 563 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 EHD1Q9H4M9 534 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 C6orf203Q9P0P8 240 aaPredicted RBP7.51□□□□□ -1.21
VPS53-204ENST00000437048 KAT6AQ92794 2004 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 LCA5LO95447 670 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 SLC45A4Q5BKX6 768 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 SCUBE1Q8IWY4 988 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 ANAPC7Q9UJX3 599 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 KNL1Q8NG31 2342 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 CARNS1A5YM72 827 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 C5orf58C9J3I9 102 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 DLGAP3O95886 979 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 BCAR1P56945 870 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 SAMD4BQ5PRF9 694 aaKnown RBP7.51□□□□□ -1.21
VPS53-204ENST00000437048 ZCCHC7Q8N3Z6 543 aaKnown RBP7.51□□□□□ -1.21
VPS53-204ENST00000437048 CNOT8Q9UFF9 292 aaKnown RBP7.51□□□□□ -1.21
VPS53-204ENST00000437048 FBXO40Q9UH90 709 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 FLT1P17948 1338 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 GRIK1P39086 918 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 IDI1Q13907 227 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 MYBPC2Q14324 1141 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 TSNQ15631 228 aaKnown RBP7.51□□□□□ -1.21
VPS53-204ENST00000437048 EFHC2Q5JST6 749 aa7.51□□□□□ -1.21
VPS53-204ENST00000437048 DYMQ7RTS9 669 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms