RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 THOC3Q96J01 351 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 EPYCQ99645 322 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 P2RY13Q9BPV8 354 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 LDHAL6BQ9BYZ2 381 aaPredicted RBP2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 PLA2G2FQ9BZM2 168 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 ALDH8A1Q9H2A2 487 aaPredicted RBP2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 TTYH1Q9H313 450 aaPredicted RBP2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 RNF41Q9H4P4 317 aaPredicted RBP2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 RC3H2Q9HBD1 1191 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 RIC8AQ9NPQ8 531 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 DDX28Q9NUL7 540 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 TXLNGQ9NUQ3 528 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 KCNG2Q9UJ96 466 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 BTRCQ9Y297 605 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 ABCC11Q96J66 1382 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 GRM6O15303 877 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 SH3BP5O60239 455 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 KLHL18O94889 574 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 DLGAP3O95886 979 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 ATP5BP06576 529 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 TNNT1P13805 278 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 HOXB2P14652 356 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 PSMC3P17980 439 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 CCL11P51671 97 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 RIPK4P57078 832 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 PLGLB1Q02325 96 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 ZNF33AQ06730 810 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 MFSD10Q14728 455 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 PDIA6Q15084 440 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 PLCL1Q15111 1095 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 CCL14Q16627 93 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 TFDP3Q5H9I0 405 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 FAXCQ5TGI0 409 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 ZNF280DQ6N043 979 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 C17orf99Q6UX52 265 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 SH3RF1Q7Z6J0 888 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 LUZP1Q86V48 1076 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 GAS2L3Q86XJ1 694 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 RAB43Q86YS6 212 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 WDR63Q8IWG1 891 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 EID2Q8N6I1 236 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 AUTS2Q8WXX7 1259 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 NAT6Q93015 286 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 TMEM125Q96AQ2 219 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 KRT12Q99456 494 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 ZCWPW1Q9H0M4 648 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 SMOC1Q9H4F8 434 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 TMEM206Q9H813 350 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 CHODLQ9H9P2 273 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 TRMT13Q9NUP7 481 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 TUBE1Q9UJT0 475 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 KCND3Q9UK17 655 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 TRIM35Q9UPQ4 493 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 TLR6Q9Y2C9 796 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 MORC2Q9Y6X9 1032 aaPredicted RBP2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 ACANP16112 2415 aa2.97□□□□□ -1.93
CCDC88A-205ENST00000426576 A0A1B0GUH1 482 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 TMEM200CA6NKL6 621 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 YDJCA8MPS7 323 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 SMAPO00193 183 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 GIPC1O14908 333 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 KIF1CO43896 1103 aaKnown RBP2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 LILRB5O75023 590 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 TNFSF15O95150 251 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 GGPS1O95749 300 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 C8AP07357 584 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 VIMP08670 466 aaKnown RBP2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 CAPN3P20807 821 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 POLGP54098 1239 aaPredicted RBP2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 TAS2R50P59544 299 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 PRKAA1Q13131 559 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 CBLBQ13191 982 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 DCTN2Q13561 401 aaKnown RBP2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 EIF2S3LQ2VIR3 472 aaKnown RBP2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 RABGAP1LQ5R372 815 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 FIGLAQ6QHK4 219 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 MEX3BQ6ZN04 569 aaKnown RBP2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 SV2BQ7L1I2 683 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 PIGWQ7Z7B1 504 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 DEPTORQ8TB45 409 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 MYOCQ99972 504 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 LDAHQ9H6V9 325 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 SYNCQ9H7C4 482 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 NOD2Q9HC29 1040 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 MTMR6Q9Y217 621 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 PADI2Q9Y2J8 665 aa2.96□□□□□ -1.93
CCDC88A-205ENST00000426576 AGLP35573 1532 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 ABCB11O95342 1321 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 NEURL4Q96JN8 1562 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 PLOD2O00469 737 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 MAFGO15525 162 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 NRP2O60462 931 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 SASH3O75995 380 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 LY86O95711 162 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 ANXA1P04083 346 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 IL1R1P14778 569 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 EIF2AK2P19525 551 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 RPL21P46778 160 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 TLE4Q04727 773 aa2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms