RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 KIAA0319Q5VV43 1072 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 C9orf57Q5W0N0 161 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 PSRC1Q6PGN9 363 aaPredicted RBP4.35□□□□□ -1.71
LIG4-201ENST00000356922 GLB1LQ6UWU2 654 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 RRAGAQ7L523 313 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 TDHQ8IZJ6 230 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 GOLGA5Q8TBA6 731 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 MKNK1Q9BUB5 465 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 ASB7Q9H672 318 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 C1orf112Q9NSG2 853 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 HMGXB4Q9UGU5 601 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 AGAP1Q9UPQ3 857 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 PDCD11Q14690 1871 aaKnown RBP4.35□□□□□ -1.71
LIG4-201ENST00000356922 A0A1B0GTH6 734 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 B3GAT3O94766 335 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 KIF20AO95235 890 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 AMHP03971 560 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 KRT19P08727 400 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 WEE2P0C1S8 567 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 EPB41P11171 864 aaKnown RBP4.35□□□□□ -1.71
LIG4-201ENST00000356922 SCP2P22307 547 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 LMO2P25791 158 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 PON1P27169 355 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 PBX1P40424 430 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 MTIF2P46199 727 aaKnown RBP4.35□□□□□ -1.71
LIG4-201ENST00000356922 RAP1GAPP47736 663 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 OR1G1P47890 313 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 RAB27AP51159 221 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 RBM10P98175 930 aaKnown RBP4.35□□□□□ -1.71
LIG4-201ENST00000356922 TAP1Q03518 808 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 PPP2R3AQ06190 1150 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 BTG3Q14201 252 aaPredicted RBP4.35□□□□□ -1.71
LIG4-201ENST00000356922 ARID5BQ14865 1188 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 EPC2Q52LR7 807 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 CT47A1Q5JQC4 288 aaPredicted RBP4.35□□□□□ -1.71
LIG4-201ENST00000356922 E4F1Q66K89 784 aaPredicted RBP4.35□□□□□ -1.71
LIG4-201ENST00000356922 INTS8Q75QN2 995 aaKnown RBP4.35□□□□□ -1.71
LIG4-201ENST00000356922 TMC2Q8TDI7 906 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 TMEM209Q96SK2 561 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 YME1L1Q96TA2 773 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 CGRRF1Q99675 332 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 PLEKHA5Q9HAU0 1116 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 CGNQ9P2M7 1197 aaKnown RBP4.35□□□□□ -1.71
LIG4-201ENST00000356922 LRFN2Q9ULH4 789 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 SIK3Q9Y2K2 1263 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.35□□□□□ -1.71
LIG4-201ENST00000356922 VWA8A3KMH1 1905 aa4.35□□□□□ -1.71
LIG4-201ENST00000356922 SLC16A3O15427 465 aaKnown RBP4.34□□□□□ -1.71
LIG4-201ENST00000356922 ADAM12O43184 909 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 HLA-DRAP01903 254 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 CDK11BP21127 795 aaKnown RBP4.34□□□□□ -1.71
LIG4-201ENST00000356922 BMP8BP34820 402 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 IRS1P35568 1242 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 KCNJ6P48051 423 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 YARSP54577 528 aaKnown RBP4.34□□□□□ -1.71
LIG4-201ENST00000356922 DUOXA2Q1HG44 320 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 KCNT2Q6UVM3 1135 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 WDR49Q8IV35 697 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 SP7Q8TDD2 431 aaPredicted RBP4.34□□□□□ -1.71
LIG4-201ENST00000356922 KREMEN1Q96MU8 473 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 TWNKQ96RR1 684 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 FNBP1Q96RU3 617 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 RAD9AQ99638 391 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 ZBED2Q9BTP6 218 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 GPR88Q9GZN0 384 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 NAT10Q9H0A0 1025 aaKnown RBP4.34□□□□□ -1.71
LIG4-201ENST00000356922 TTYH1Q9H313 450 aaPredicted RBP4.34□□□□□ -1.71
LIG4-201ENST00000356922 DACH1Q9UI36 760 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 COQ4Q9Y3A0 265 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 R3HCC1Q9Y3T6 440 aaKnown RBP4.34□□□□□ -1.71
LIG4-201ENST00000356922 C2CD2Q9Y426 696 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 SPEGQ15772 3267 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 PES1O00541 588 aaKnown RBP4.34□□□□□ -1.71
LIG4-201ENST00000356922 MAPK13O15264 365 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 ATP2C2O75185 946 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 CFHP08603 1231 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 ABCD1P33897 745 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 ERVFC1P60507 584 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 RNASELQ05823 741 aaKnown RBP4.34□□□□□ -1.71
LIG4-201ENST00000356922 TUSC3Q13454 348 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 NCOA4Q13772 614 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 SYCP1Q15431 976 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 SOWAHAQ2M3V2 549 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 WDR72Q3MJ13 1102 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 RTP2Q5QGT7 225 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 KLHL23Q8NBE8 558 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 KBTBD7Q8WVZ9 684 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 CLP1Q92989 425 aaKnown RBP4.34□□□□□ -1.71
LIG4-201ENST00000356922 PGBD4Q96DM1 585 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 FAM161BQ96MY7 647 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 RTP3Q9BQQ7 232 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 ZSWIM1Q9BR11 485 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 NKX2-4Q9H2Z4 354 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 SMYD3Q9H7B4 428 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 KIAA1586Q9HCI6 787 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 FAM207AQ9NSI2 230 aaPredicted RBP4.34□□□□□ -1.71
LIG4-201ENST00000356922 RAB20Q9NX57 234 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 KIAA1671Q9BY89 1806 aa4.34□□□□□ -1.71
LIG4-201ENST00000356922 BDP1A6H8Y1 2624 aa4.34□□□□□ -1.72
LIG4-201ENST00000356922 PODXLO00592 558 aa4.34□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 160.7 ms