RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 SF3B1O75533 1304 aaKnown RBP eCLIP13.06□□□□□ -0.323e-6■■■■■ 57.3
SCFD1-201ENST00000311943 TGM5O43548 720 aa13.05□□□□□ -0.32
SCFD1-201ENST00000311943 CST3P01034 146 aaPredicted RBP13.05□□□□□ -0.32
SCFD1-201ENST00000311943 ITGB3P05106 788 aa13.05□□□□□ -0.32
SCFD1-201ENST00000311943 DLATP10515 647 aaKnown RBP13.05□□□□□ -0.32
SCFD1-201ENST00000311943 FGFR3P22607 806 aa13.05□□□□□ -0.32
SCFD1-201ENST00000311943 MRPS5P82675 430 aaKnown RBP13.05□□□□□ -0.32
SCFD1-201ENST00000311943 SNRNP35Q16560 246 aaKnown RBP13.05□□□□□ -0.32
SCFD1-201ENST00000311943 USP41Q3LFD5 358 aa13.05□□□□□ -0.32
SCFD1-201ENST00000311943 PYM1Q9BRP8 204 aaKnown RBP13.05□□□□□ -0.32
SCFD1-201ENST00000311943 TTPALQ9BTX7 342 aa13.05□□□□□ -0.32
SCFD1-201ENST00000311943 S1PR5Q9H228 398 aa13.05□□□□□ -0.32
SCFD1-201ENST00000311943 LMBRD1Q9NUN5 540 aa13.05□□□□□ -0.32
SCFD1-201ENST00000311943 DPP3Q9NY33 737 aa13.05□□□□□ -0.32
SCFD1-201ENST00000311943 MAN1B1Q9UKM7 699 aa13.05□□□□□ -0.32
SCFD1-201ENST00000311943 UBQLN1Q9UMX0 589 aaKnown RBP13.05□□□□□ -0.32
SCFD1-201ENST00000311943 IRAK3Q9Y616 596 aa13.05□□□□□ -0.32
SCFD1-201ENST00000311943 MBTPS2O43462 519 aa13.05□□□□□ -0.32
SCFD1-201ENST00000311943 POLR2BP30876 1174 aaKnown RBP13.05□□□□□ -0.32
SCFD1-201ENST00000311943 OR1D2P34982 312 aa13.05□□□□□ -0.32
SCFD1-201ENST00000311943 VARS2Q5ST30 1063 aaKnown RBP13.05□□□□□ -0.32
SCFD1-201ENST00000311943 SPATA20Q8TB22 786 aa13.05□□□□□ -0.32
SCFD1-201ENST00000311943 BORCS6Q96GS4 357 aa13.05□□□□□ -0.32
SCFD1-201ENST00000311943 SLC38A7Q9NVC3 462 aa13.05□□□□□ -0.32
SCFD1-201ENST00000311943 CDY1Q9Y6F8 540 aa13.05□□□□□ -0.32
SCFD1-201ENST00000311943 TTC28Q96AY4 2481 aa13.04□□□□□ -0.32
SCFD1-201ENST00000311943 ANO9A1A5B4 782 aa13.04□□□□□ -0.32
SCFD1-201ENST00000311943 PIRO00625 290 aa13.04□□□□□ -0.32
SCFD1-201ENST00000311943 NRG2O14511 850 aaPredicted RBP13.04□□□□□ -0.32
SCFD1-201ENST00000311943 LRPAP1P30533 357 aa13.04□□□□□ -0.32
SCFD1-201ENST00000311943 LILRA4P59901 499 aa13.04□□□□□ -0.32
SCFD1-201ENST00000311943 ALCAMQ13740 583 aa13.04□□□□□ -0.32
SCFD1-201ENST00000311943 PSMD5Q16401 504 aa13.04□□□□□ -0.32
SCFD1-201ENST00000311943 RARS2Q5T160 578 aaKnown RBP13.04□□□□□ -0.32
SCFD1-201ENST00000311943 ANKRD54Q6NXT1 300 aa13.04□□□□□ -0.32
SCFD1-201ENST00000311943 ADAMTS19Q8TE59 1207 aa13.04□□□□□ -0.32
SCFD1-201ENST00000311943 ATXN2LQ8WWM7 1075 aaKnown RBP13.04□□□□□ -0.32
SCFD1-201ENST00000311943 FBXL18Q96ME1 805 aa13.04□□□□□ -0.32
SCFD1-201ENST00000311943 USP15Q9Y4E8 981 aaPredicted RBP13.04□□□□□ -0.32
SCFD1-201ENST00000311943 TMEM189-UBE2V1I3L0A0 370 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 EXOC3O60645 756 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 AKAP3O75969 853 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 KRT19P08727 400 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 LEXMQ3ZCV2 418 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 CEP135Q66GS9 1140 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 CSGALNACT2Q8N6G5 542 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 XXYLT1Q8NBI6 393 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 SMRP1Q8NCR6 262 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 GPT2Q8TD30 523 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 PGLYRP2Q96PD5 576 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 CRISPLD1Q9H336 500 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 RXFP1Q9HBX9 757 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 MAN1C1Q9NR34 630 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 DMAC2Q9NW81 257 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 COG5Q9UP83 839 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 AGAP1Q9UPQ3 857 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 ZNF233A6NK53 670 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 NR3C1P04150 777 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 UBE2HP62256 183 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 CYP24A1Q07973 514 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 KCNB1Q14721 858 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 C1orf220Q5T0J3 134 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 STXBP4Q6ZWJ1 553 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 TTC9BQ8N6N2 239 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 PIK3R5Q8WYR1 880 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 SMARCE1Q969G3 411 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 SUSD3Q96L08 255 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 SENP8Q96LD8 212 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 LPIN3Q9BQK8 851 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 ASB7Q9H672 318 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 CD207Q9UJ71 328 aa13.03□□□□□ -0.32
SCFD1-201ENST00000311943 WDR27A2RRH5 827 aa13.02□□□□□ -0.33
SCFD1-201ENST00000311943 KINO60870 393 aaKnown RBP13.02□□□□□ -0.33
SCFD1-201ENST00000311943 VNN2O95498 520 aa13.02□□□□□ -0.33
SCFD1-201ENST00000311943 STX17P56962 302 aa13.02□□□□□ -0.33
SCFD1-201ENST00000311943 PSMD2Q13200 908 aa13.02□□□□□ -0.33
SCFD1-201ENST00000311943 ZCWPW2Q504Y3 356 aa13.02□□□□□ -0.33
SCFD1-201ENST00000311943 TJAP1Q5JTD0 557 aa13.02□□□□□ -0.33
SCFD1-201ENST00000311943 ANKRD40Q6AI12 368 aa13.02□□□□□ -0.33
SCFD1-201ENST00000311943 KLHL10Q6JEL2 608 aa13.02□□□□□ -0.33
SCFD1-201ENST00000311943 PDE12Q6L8Q7 609 aaKnown RBP13.02□□□□□ -0.33
SCFD1-201ENST00000311943 LILRA6Q6PI73 481 aa13.02□□□□□ -0.33
SCFD1-201ENST00000311943 STKLD1Q8NE28 680 aa13.02□□□□□ -0.33
SCFD1-201ENST00000311943 BEST2Q8NFU1 509 aa13.02□□□□□ -0.33
SCFD1-201ENST00000311943 UROC1Q96N76 676 aa13.02□□□□□ -0.33
SCFD1-201ENST00000311943 MED15Q96RN5 788 aa13.02□□□□□ -0.33
SCFD1-201ENST00000311943 RTP3Q9BQQ7 232 aa13.02□□□□□ -0.33
SCFD1-201ENST00000311943 MMRN2Q9H8L6 949 aa13.02□□□□□ -0.33
SCFD1-201ENST00000311943 FBXL5Q9UKA1 691 aa13.02□□□□□ -0.33
SCFD1-201ENST00000311943 NME7Q9Y5B8 376 aa13.02□□□□□ -0.33
SCFD1-201ENST00000311943 C2orf16Q68DN1 1984 aa13.02□□□□□ -0.33
SCFD1-201ENST00000311943 LRRIQ3A6PVS8 624 aaPredicted RBP13.01□□□□□ -0.33
SCFD1-201ENST00000311943 SOAT2O75908 522 aa13.01□□□□□ -0.33
SCFD1-201ENST00000311943 SEC24AO95486 1093 aa13.01□□□□□ -0.33
SCFD1-201ENST00000311943 TRIM49P0CI25 452 aa13.01□□□□□ -0.33
SCFD1-201ENST00000311943 TRIM49CP0CI26 452 aa13.01□□□□□ -0.33
SCFD1-201ENST00000311943 SCP2P22307 547 aa13.01□□□□□ -0.33
SCFD1-201ENST00000311943 RPL9P32969 192 aaKnown RBP13.01□□□□□ -0.33
SCFD1-201ENST00000311943 NTHL1P78549 312 aa13.01□□□□□ -0.33
SCFD1-201ENST00000311943 WSCD1Q658N2 575 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms