RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 DDX12PQ92771 950 aa21.24■□□□□ 0.99
LIME1-201ENST00000309546 FGF13Q92913 245 aa21.24■□□□□ 0.99
LIME1-201ENST00000309546 USP28Q96RU2 1077 aa21.24■□□□□ 0.99
LIME1-201ENST00000309546 DNMT3BQ9UBC3 853 aaKnown RBP21.24■□□□□ 0.99
LIME1-201ENST00000309546 CA14Q9ULX7 337 aa21.24■□□□□ 0.99
LIME1-201ENST00000309546 ZFP37Q9Y6Q3 630 aaPredicted RBP21.24■□□□□ 0.99
LIME1-201ENST00000309546 ANHXE9PGG2 379 aa21.23■□□□□ 0.99
LIME1-201ENST00000309546 STK25O00506 426 aa21.23■□□□□ 0.99
LIME1-201ENST00000309546 XPOTO43592 962 aaKnown RBP21.23■□□□□ 0.99
LIME1-201ENST00000309546 GALR2O43603 387 aaPredicted RBP21.23■□□□□ 0.99
LIME1-201ENST00000309546 STX6O43752 255 aa21.23■□□□□ 0.99
LIME1-201ENST00000309546 FAM189A1O60320 539 aa21.23■□□□□ 0.99
LIME1-201ENST00000309546 POU2F2P09086 479 aa21.23■□□□□ 0.99
LIME1-201ENST00000309546 SRFP11831 508 aa21.23■□□□□ 0.99
LIME1-201ENST00000309546 LRPAP1P30533 357 aa21.23■□□□□ 0.99
LIME1-201ENST00000309546 ABCD1P33897 745 aa21.23■□□□□ 0.99
LIME1-201ENST00000309546 GTF2BQ00403 316 aa21.23■□□□□ 0.99
LIME1-201ENST00000309546 MAP4K3Q8IVH8 894 aa21.23■□□□□ 0.99
LIME1-201ENST00000309546 ING5Q8WYH8 240 aa21.23■□□□□ 0.99
LIME1-201ENST00000309546 CYP4F11Q9HBI6 524 aa21.23■□□□□ 0.99
LIME1-201ENST00000309546 PCDHB8Q9UN66 801 aa21.23■□□□□ 0.99
LIME1-201ENST00000309546 A0A0B4J269 797 aa21.22■□□□□ 0.99
LIME1-201ENST00000309546 TISP43B9A030 160 aa21.22■□□□□ 0.99
LIME1-201ENST00000309546 ANKRD63C9JTQ0 380 aa21.22■□□□□ 0.99
LIME1-201ENST00000309546 H0Y858 1186 aa21.22■□□□□ 0.99
LIME1-201ENST00000309546 ABLIM3O94929 683 aa21.22■□□□□ 0.99
LIME1-201ENST00000309546 NPR3P17342 541 aa21.22■□□□□ 0.99
LIME1-201ENST00000309546 CLCN5P51795 746 aa21.22■□□□□ 0.99
LIME1-201ENST00000309546 NUBP1P53384 320 aa21.22■□□□□ 0.99
LIME1-201ENST00000309546 MRPL58Q14197 206 aaKnown RBP21.22■□□□□ 0.99
LIME1-201ENST00000309546 JADE1Q6IE81 842 aa21.22■□□□□ 0.99
LIME1-201ENST00000309546 PARM1Q6UWI2 310 aa21.22■□□□□ 0.99
LIME1-201ENST00000309546 GPR152Q8TDT2 470 aa21.22■□□□□ 0.99
LIME1-201ENST00000309546 ATOH1Q92858 354 aaPredicted RBP21.22■□□□□ 0.99
LIME1-201ENST00000309546 FGF14Q92915 247 aa21.22■□□□□ 0.99
LIME1-201ENST00000309546 ZSCAN16Q9H4T2 348 aaPredicted RBP21.22■□□□□ 0.99
LIME1-201ENST00000309546 WNT16Q9UBV4 365 aa21.22■□□□□ 0.99
LIME1-201ENST00000309546 MRPS23Q9Y3D9 190 aaKnown RBP21.22■□□□□ 0.99
LIME1-201ENST00000309546 TIMM13Q9Y5L4 95 aaPredicted RBP21.22■□□□□ 0.99
LIME1-201ENST00000309546 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.22■□□□□ 0.99
LIME1-201ENST00000309546 TBC1D4O60343 1298 aa21.21■□□□□ 0.99
LIME1-201ENST00000309546 SEC24AO95486 1093 aa21.21■□□□□ 0.99
LIME1-201ENST00000309546 CPB1P15086 417 aa21.21■□□□□ 0.99
LIME1-201ENST00000309546 ATF2P15336 505 aa21.21■□□□□ 0.99
LIME1-201ENST00000309546 AOC1P19801 751 aa21.21■□□□□ 0.99
LIME1-201ENST00000309546 CYP3A5P20815 502 aa21.21■□□□□ 0.99
LIME1-201ENST00000309546 STAT6P42226 847 aa21.21■□□□□ 0.99
LIME1-201ENST00000309546 YWHAHQ04917 246 aaPredicted RBP21.21■□□□□ 0.99
LIME1-201ENST00000309546 ZBTB6Q15916 424 aa21.21■□□□□ 0.99
LIME1-201ENST00000309546 ADALQ6DHV7 355 aa21.21■□□□□ 0.99
LIME1-201ENST00000309546 DSTYKQ6XUX3 929 aa21.21■□□□□ 0.99
LIME1-201ENST00000309546 SV2BQ7L1I2 683 aa21.21■□□□□ 0.99
LIME1-201ENST00000309546 RTL10Q7L3V2 364 aa21.21■□□□□ 0.99
LIME1-201ENST00000309546 BEST2Q8NFU1 509 aa21.21■□□□□ 0.99
LIME1-201ENST00000309546 RPP25Q9BUL9 199 aaKnown RBP21.21■□□□□ 0.99
LIME1-201ENST00000309546 TBC1D7Q9P0N9 293 aa21.21■□□□□ 0.99
LIME1-201ENST00000309546 CPSF3Q9UKF6 684 aaKnown RBP21.21■□□□□ 0.99
LIME1-201ENST00000309546 INSL5Q9Y5Q6 135 aa21.21■□□□□ 0.99
LIME1-201ENST00000309546 ARHGEF37A1IGU5 675 aa21.2■□□□□ 0.98
LIME1-201ENST00000309546 KRBA1A5PL33 1030 aa21.2■□□□□ 0.98
LIME1-201ENST00000309546 MYMKA6NI61 221 aa21.2■□□□□ 0.98
LIME1-201ENST00000309546 PPEF2O14830 753 aa21.2■□□□□ 0.98
LIME1-201ENST00000309546 PI15O43692 258 aa21.2■□□□□ 0.98
LIME1-201ENST00000309546 RHOP08100 348 aa21.2■□□□□ 0.98
LIME1-201ENST00000309546 NFICP08651 508 aa21.2■□□□□ 0.98
LIME1-201ENST00000309546 ACOT2P49753 483 aa21.2■□□□□ 0.98
LIME1-201ENST00000309546 ADCY1Q08828 1119 aa21.2■□□□□ 0.98
LIME1-201ENST00000309546 STK38Q15208 465 aa21.2■□□□□ 0.98
LIME1-201ENST00000309546 CCDC73Q6ZRK6 1079 aa21.2■□□□□ 0.98
LIME1-201ENST00000309546 MTSS1LQ765P7 747 aa21.2■□□□□ 0.98
LIME1-201ENST00000309546 USP37Q86T82 979 aa21.2■□□□□ 0.98
LIME1-201ENST00000309546 CD302Q8IX05 232 aa21.2■□□□□ 0.98
LIME1-201ENST00000309546 NPAS3Q8IXF0 933 aa21.2■□□□□ 0.98
LIME1-201ENST00000309546 PANK2Q9BZ23 570 aa21.2■□□□□ 0.98
LIME1-201ENST00000309546 IRF2BPLQ9H1B7 796 aa21.2■□□□□ 0.98
LIME1-201ENST00000309546 IKZF4Q9H2S9 585 aa21.2■□□□□ 0.98
LIME1-201ENST00000309546 MRPL44Q9H9J2 332 aaKnown RBP21.2■□□□□ 0.98
LIME1-201ENST00000309546 KCNH3Q9ULD8 1083 aa21.2■□□□□ 0.98
LIME1-201ENST00000309546 M0QZQ0 153 aa21.19■□□□□ 0.98
LIME1-201ENST00000309546 TULP1O00294 542 aaPredicted RBP21.19■□□□□ 0.98
LIME1-201ENST00000309546 IDEP14735 1019 aa21.19■□□□□ 0.98
LIME1-201ENST00000309546 TMEM132DQ14C87 1099 aa21.19■□□□□ 0.98
LIME1-201ENST00000309546 SLC39A14Q15043 492 aa21.19■□□□□ 0.98
LIME1-201ENST00000309546 SLC5A9Q2M3M2 681 aa21.19■□□□□ 0.98
LIME1-201ENST00000309546 SPATA1Q5VX52 437 aa21.19■□□□□ 0.98
LIME1-201ENST00000309546 TPGS2Q68CL5 300 aa21.19■□□□□ 0.98
LIME1-201ENST00000309546 SLFN12LQ6IEE8 588 aa21.19■□□□□ 0.98
LIME1-201ENST00000309546 ZNF720Q7Z2F6 126 aa21.19■□□□□ 0.98
LIME1-201ENST00000309546 TCEAL8Q8IYN2 117 aa21.19■□□□□ 0.98
LIME1-201ENST00000309546 KXD1Q9BQD3 176 aa21.19■□□□□ 0.98
LIME1-201ENST00000309546 CORO1BQ9BR76 489 aa21.19■□□□□ 0.98
LIME1-201ENST00000309546 ST6GALNAC4Q9H4F1 302 aa21.19■□□□□ 0.98
LIME1-201ENST00000309546 ARHGEF3Q9NR81 526 aa21.19■□□□□ 0.98
LIME1-201ENST00000309546 AGO2Q9UKV8 859 aaKnown RBP21.19■□□□□ 0.98
LIME1-201ENST00000309546 TSC2P49815 1807 aa21.19■□□□□ 0.98
LIME1-201ENST00000309546 TCHHQ07283 1943 aa21.19■□□□□ 0.98
LIME1-201ENST00000309546 PTPN2P17706 415 aa21.18■□□□□ 0.98
LIME1-201ENST00000309546 RNF19BQ6ZMZ0 732 aa21.18■□□□□ 0.98
LIME1-201ENST00000309546 PDILTQ8N807 584 aa21.18■□□□□ 0.98
LIME1-201ENST00000309546 POMGNT1Q8WZA1 660 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms