RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 FOCADQ5VW36 1801 aa12.53□□□□□ -0.4
SYNGAP1-201ENST00000293748 FARP2O94887 1054 aaPredicted RBP12.53□□□□□ -0.4
SYNGAP1-201ENST00000293748 GGPS1O95749 300 aa12.53□□□□□ -0.4
SYNGAP1-201ENST00000293748 FAM47CQ5HY64 1035 aa12.53□□□□□ -0.4
SYNGAP1-201ENST00000293748 TRMT10CQ7L0Y3 403 aaKnown RBP12.53□□□□□ -0.4
SYNGAP1-201ENST00000293748 REPS2Q8NFH8 660 aa12.53□□□□□ -0.4
SYNGAP1-201ENST00000293748 KLC2Q9H0B6 622 aa12.53□□□□□ -0.4
SYNGAP1-201ENST00000293748 ARL2BPQ9Y2Y0 163 aa12.53□□□□□ -0.4
SYNGAP1-201ENST00000293748 TRIM49BA6NDI0 452 aa12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 PEX10O60683 326 aa12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 ATP1A1P05023 1023 aaKnown RBP12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 DDIT3P35638 169 aa12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 OCRLQ01968 901 aa12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 CNTN2Q02246 1040 aa12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 USP17L6PQ6QN14 398 aa12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 CFAP36Q96G28 342 aa12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 CCT8L2Q96SF2 557 aa12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 CNOT8Q9UFF9 292 aaKnown RBP12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 ANAPC7Q9UJX3 599 aa12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 CAPN11Q9UMQ6 739 aa12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 KPNA7A9QM74 516 aa12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 DYNC1LI2O43237 492 aaPredicted RBP12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 MYL3P08590 195 aa12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 GUCY1A3Q02108 690 aa12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 GFPT1Q06210 699 aaPredicted RBP12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 SURF1Q15526 300 aa12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 UBE2SQ16763 222 aa12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 TAF1BQ53T94 588 aaPredicted RBP12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 SLC30A10Q6XR72 485 aa12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 GUF1Q8N442 669 aaKnown RBP12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 VPS39Q96JC1 886 aa12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 KATNAL1Q9BW62 490 aa12.52□□□□□ -0.4
SYNGAP1-201ENST00000293748 MEIS1O00470 390 aa12.52□□□□□ -0.41
SYNGAP1-201ENST00000293748 TRIM66O15016 1216 aa12.52□□□□□ -0.41
SYNGAP1-201ENST00000293748 CCDC22O60826 627 aa12.52□□□□□ -0.41
SYNGAP1-201ENST00000293748 CABYRO75952 493 aa12.52□□□□□ -0.41
SYNGAP1-201ENST00000293748 CHEK2O96017 543 aa12.52□□□□□ -0.41
SYNGAP1-201ENST00000293748 LRIG3Q6UXM1 1119 aa12.52□□□□□ -0.41
SYNGAP1-201ENST00000293748 ZNF473Q8WTR7 871 aaKnown RBP12.52□□□□□ -0.41
SYNGAP1-201ENST00000293748 FAM161BQ96MY7 647 aa12.52□□□□□ -0.41
SYNGAP1-201ENST00000293748 PXMP2Q9NR77 195 aa12.52□□□□□ -0.41
SYNGAP1-201ENST00000293748 GJB1P08034 283 aa12.52□□□□□ -0.41
SYNGAP1-201ENST00000293748 BIRC2Q13490 618 aa12.52□□□□□ -0.41
SYNGAP1-201ENST00000293748 LAMC2Q13753 1193 aa12.52□□□□□ -0.41
SYNGAP1-201ENST00000293748 KLC3Q6P597 504 aa12.52□□□□□ -0.41
SYNGAP1-201ENST00000293748 C16orf87Q6PH81 154 aa12.52□□□□□ -0.41
SYNGAP1-201ENST00000293748 ACAD11Q709F0 780 aa12.52□□□□□ -0.41
SYNGAP1-201ENST00000293748 TRIM33Q9UPN9 1127 aa12.52□□□□□ -0.41
SYNGAP1-201ENST00000293748 AGTP01019 485 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 ZNF792Q3KQV3 632 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 GNASQ5JWF2 1037 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 BTBD6Q96KE9 485 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 POLR3CQ9BUI4 534 aaPredicted RBP12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 GJB4Q9NTQ9 266 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 ZBBXA8MT70 800 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 MAN1A2O60476 641 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 TGFB3P10600 412 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 SERPINB4P48594 390 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 PCYT1AP49585 367 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 KCNH2Q12809 1159 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 SPATA21Q7Z572 469 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 LCA5Q86VQ0 697 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 ICA1LQ8NDH6 482 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 CEP19Q96LK0 163 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 TTC1Q99614 292 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 PDCD2LQ9BRP1 358 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 BHMT2Q9H2M3 363 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 ADAM22Q9P0K1 906 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 WARS2Q9UGM6 360 aaKnown RBP12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 SEPT9Q9UHD8 586 aaPredicted RBP12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 WDR64B1ANS9 1081 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 HSPA9P38646 679 aaKnown RBP12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 MTMR1Q13613 665 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 SLC30A9Q6PML9 568 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 CCNI2Q6ZMN8 369 aaPredicted RBP12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 FBXL13Q8NEE6 735 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 DHX38Q92620 1227 aaKnown RBP12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 GPRASP2Q96D09 838 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 CEP170P1Q96L14 293 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 SUN2Q9UH99 717 aa12.51□□□□□ -0.41
SYNGAP1-201ENST00000293748 SYNJ2BP-COX16A0A087WUM0 186 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 ZNF233A6NK53 670 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 STXBP3O00186 592 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 NCK2O43639 380 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 KLC1Q07866 573 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 EXOC8Q8IYI6 725 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 AGGF1Q8N302 714 aaeCLIP12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 NPLOC4Q8TAT6 608 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 TRIB2Q92519 343 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 ARMC5Q96C12 935 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 COX16Q9P0S2 106 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 DCTN4Q9UJW0 460 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 TMTC4Q5T4D3 741 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 RGS9BPQ6ZS82 235 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 TRIM67Q6ZTA4 783 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 ERICH1Q86X53 443 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 FBXO16Q8IX29 292 aaPredicted RBP12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 MTMR8Q96EF0 704 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 KIF2CQ99661 725 aa12.5□□□□□ -0.41
SYNGAP1-201ENST00000293748 SMYD3Q9H7B4 428 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms