RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 BFSP1Q12934 665 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 MTHFD1LQ6UB35 978 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 WDR66Q8TBY9 1149 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 ZNF75CPQ92670 426 aaPredicted RBP15.23■□□□□ 0.03
SDC1-201ENST00000254351 PI4K2AQ9BTU6 479 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 TRAIPQ9BWF2 469 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 RHBDL2Q9NX52 303 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 MARCOQ9UEW3 520 aaPredicted RBP15.23■□□□□ 0.03
SDC1-201ENST00000254351 USP20Q9Y2K6 914 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 MAP3K7O43318 606 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 WFS1O76024 890 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 RPA1P27694 616 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 SKIV2L2P42285 1042 aaKnown RBP15.23■□□□□ 0.03
SDC1-201ENST00000254351 SCNN1DP51172 638 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 GAD2Q05329 585 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 TCP10Q12799 353 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 SF3B3Q15393 1217 aaKnown RBP15.23■□□□□ 0.03
SDC1-201ENST00000254351 ASPRV1Q53RT3 343 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 IZUMO2Q6UXV1 221 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 SHKBP1Q8TBC3 707 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 FAM136AQ96C01 138 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 TUBGCP5Q96RT8 1024 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 PARVGQ9HBI0 331 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.23■□□□□ 0.03
SDC1-201ENST00000254351 WHRNQ9P202 907 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 LRCH1Q9Y2L9 728 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 STARD13Q9Y3M8 1113 aa15.23■□□□□ 0.03
SDC1-201ENST00000254351 SLC16A3O15427 465 aaKnown RBP15.22■□□□□ 0.03
SDC1-201ENST00000254351 MSH4O15457 936 aa15.22■□□□□ 0.03
SDC1-201ENST00000254351 OPHN1O60890 802 aa15.22■□□□□ 0.03
SDC1-201ENST00000254351 TJP3O95049 919 aa15.22■□□□□ 0.03
SDC1-201ENST00000254351 SPIRE1Q08AE8 756 aa15.22■□□□□ 0.03
SDC1-201ENST00000254351 FYB2Q5VWT5 728 aa15.22■□□□□ 0.03
SDC1-201ENST00000254351 C11orf63Q6NUN7 778 aa15.22■□□□□ 0.03
SDC1-201ENST00000254351 TRABD2AQ86V40 505 aa15.22■□□□□ 0.03
SDC1-201ENST00000254351 CFAP61Q8NHU2 1237 aa15.22■□□□□ 0.03
SDC1-201ENST00000254351 EPS8L1Q8TE68 723 aa15.22■□□□□ 0.03
SDC1-201ENST00000254351 MAML1Q92585 1016 aa15.22■□□□□ 0.03
SDC1-201ENST00000254351 RBM41Q96IZ5 413 aaKnown RBP15.22■□□□□ 0.03
SDC1-201ENST00000254351 SLC17A7Q9P2U7 560 aa15.22■□□□□ 0.03
SDC1-201ENST00000254351 H3BRJ5 948 aa15.22■□□□□ 0.03
SDC1-201ENST00000254351 HAUS5O94927 633 aa15.22■□□□□ 0.03
SDC1-201ENST00000254351 CLK2P49760 499 aaKnown RBP15.22■□□□□ 0.03
SDC1-201ENST00000254351 ORC2Q13416 577 aaPredicted RBP15.22■□□□□ 0.03
SDC1-201ENST00000254351 HYIQ5T013 277 aa15.22■□□□□ 0.03
SDC1-201ENST00000254351 TTC17Q96AE7 1141 aa15.22■□□□□ 0.03
SDC1-201ENST00000254351 GRAMD1AQ96CP6 724 aa15.22■□□□□ 0.03
SDC1-201ENST00000254351 TOPORSQ9NS56 1045 aaPredicted RBP15.22■□□□□ 0.03
SDC1-201ENST00000254351 ZNF148Q9UQR1 794 aa15.22■□□□□ 0.03
SDC1-201ENST00000254351 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.22■□□□□ 0.03
SDC1-201ENST00000254351 TAF1LQ8IZX4 1826 aa15.22■□□□□ 0.03
SDC1-201ENST00000254351 K7ENM7 598 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 RIMBP2O15034 1052 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 ATP5HO75947 161 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 PSMG1O95456 288 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 ESRRAP11474 423 aaPredicted RBP15.21■□□□□ 0.03
SDC1-201ENST00000254351 DEUP1Q05D60 604 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 IRGCQ6NXR0 463 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 RHBDF2Q6PJF5 856 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 PTPRN2Q92932 1015 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 SETDB2Q96T68 719 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 NDNQ99608 321 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 LNPEPQ9UIQ6 1025 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 NEU2Q9Y3R4 380 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 ADGRA3Q8IWK6 1321 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 TMEM150BA6NC51 233 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 A6NJR5 290 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 GSC2O15499 205 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 CYP1A1P04798 512 aaPredicted RBP15.21■□□□□ 0.03
SDC1-201ENST00000254351 ENO1P06733 434 aaKnown RBP15.21■□□□□ 0.03
SDC1-201ENST00000254351 GSTO1P78417 241 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 ACVR2BQ13705 512 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 LBRQ14739 615 aaKnown RBP15.21■□□□□ 0.03
SDC1-201ENST00000254351 PDCD2Q16342 344 aaPredicted RBP15.21■□□□□ 0.03
SDC1-201ENST00000254351 ANKS1BQ7Z6G8 1248 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 C7orf43Q8WVR3 580 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 INPP5DQ92835 1189 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 NMD3Q96D46 503 aaKnown RBP15.21■□□□□ 0.03
SDC1-201ENST00000254351 DNAJC1Q96KC8 554 aaKnown RBP15.21■□□□□ 0.03
SDC1-201ENST00000254351 LRRC19Q9H756 370 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 SH3BP1Q9Y3L3 701 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 ANKRD36CQ5JPF3 1778 aa15.21■□□□□ 0.03
SDC1-201ENST00000254351 CCDC160A6NGH7 325 aa15.21■□□□□ 0.02
SDC1-201ENST00000254351 TXNDC9O14530 226 aa15.21■□□□□ 0.02
SDC1-201ENST00000254351 LDHCP07864 332 aa15.21■□□□□ 0.02
SDC1-201ENST00000254351 SSTR1P30872 391 aa15.21■□□□□ 0.02
SDC1-201ENST00000254351 SLC34A1Q06495 639 aa15.21■□□□□ 0.02
SDC1-201ENST00000254351 KIF22Q14807 665 aa15.21■□□□□ 0.02
SDC1-201ENST00000254351 SLC5A9Q2M3M2 681 aa15.21■□□□□ 0.02
SDC1-201ENST00000254351 SGSM1Q2NKQ1 1148 aa15.21■□□□□ 0.02
SDC1-201ENST00000254351 WASHC2DQ5SRD0 308 aa15.21■□□□□ 0.02
SDC1-201ENST00000254351 ALYREFQ86V81 257 aaKnown RBP15.21■□□□□ 0.02
SDC1-201ENST00000254351 SLFN12Q8IYM2 578 aa15.21■□□□□ 0.02
SDC1-201ENST00000254351 ENDOVQ8N8Q3 282 aaKnown RBP15.21■□□□□ 0.02
SDC1-201ENST00000254351 ETNPPLQ8TBG4 499 aa15.21■□□□□ 0.02
SDC1-201ENST00000254351 CD101Q93033 1021 aa15.21■□□□□ 0.02
SDC1-201ENST00000254351 SHCBP1LQ9BZQ2 653 aa15.21■□□□□ 0.02
SDC1-201ENST00000254351 DCLK3Q9C098 648 aa15.21■□□□□ 0.02
SDC1-201ENST00000254351 ANKRD2Q9GZV1 360 aa15.21■□□□□ 0.02
SDC1-201ENST00000254351 SAE1Q9UBE0 346 aaPredicted RBP15.21■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms