RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 DUSP6Q16828 381 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 UPP1Q16831 310 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 BMT2Q1RMZ1 405 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 DPCR1Q3MIW9 517 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 ANO6Q4KMQ2 910 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 ARMCX5Q6P1M9 558 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 FUT10Q6P4F1 479 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 CRELD2Q6UXH1 353 aaPredicted RBP10.71□□□□□ -0.69
CLN3-261ENST00000637686 ADSSL1Q8N142 457 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 TMEM130Q8N3G9 435 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 KIAA0895Q8NCT3 520 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 ZSWIM2Q8NEG5 633 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 NOC3LQ8WTT2 800 aaKnown RBP10.71□□□□□ -0.69
CLN3-261ENST00000637686 PABPC5Q96DU9 382 aaKnown RBP10.71□□□□□ -0.69
CLN3-261ENST00000637686 SAAL1Q96ER3 474 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 UROC1Q96N76 676 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 CBWD1Q9BRT8 395 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 FAM213AQ9BRX8 229 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 HERC2P3Q9BVR0 1158 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 UBE2ZQ9H832 354 aaPredicted RBP10.71□□□□□ -0.69
CLN3-261ENST00000637686 CLDND1Q9NY35 253 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 STK39Q9UEW8 545 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 COG5Q9UP83 839 aa10.71□□□□□ -0.69
CLN3-261ENST00000637686 SF3B1O75533 1304 aaKnown RBP eCLIP10.7□□□□□ -0.7
CLN3-261ENST00000637686 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.7□□□□□ -0.7
CLN3-261ENST00000637686 BICDL2A1A5D9 508 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 GOLGA8IPA6NC78 632 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 GOLGA8JA6NMD2 632 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 PPP1R3GB7ZBB8 358 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 PODXLO00592 558 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 C2CD2LO14523 706 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 PSMA7O14818 248 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 NCK2O43639 380 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 ADRB2P07550 413 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 KCNA5P22460 613 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 GUCY2FP51841 1108 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 SNRPFP62306 86 aaKnown RBP10.7□□□□□ -0.7
CLN3-261ENST00000637686 RBM10P98175 930 aaKnown RBP10.7□□□□□ -0.7
CLN3-261ENST00000637686 ADAM15Q13444 863 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 COL19A1Q14993 1142 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 PTPN14Q15678 1187 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 ZBTB6Q15916 424 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 KNOP1Q1ED39 458 aaKnown RBP10.7□□□□□ -0.7
CLN3-261ENST00000637686 CTC1Q2NKJ3 1217 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 JADE1Q6IE81 842 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 DCLRE1AQ6PJP8 1040 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 CD300LGQ6UXG3 332 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 RNF168Q8IYW5 571 aaPredicted RBP10.7□□□□□ -0.7
CLN3-261ENST00000637686 EFHBQ8N7U6 833 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 ENOX1Q8TC92 643 aaKnown RBP10.7□□□□□ -0.7
CLN3-261ENST00000637686 TMEM174Q8WUU8 243 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 ERCC4Q92889 916 aaPredicted RBP10.7□□□□□ -0.7
CLN3-261ENST00000637686 DDX27Q96GQ7 796 aaKnown RBP10.7□□□□□ -0.7
CLN3-261ENST00000637686 B3GALT6Q96L58 329 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 CDCA3Q99618 268 aaPredicted RBP10.7□□□□□ -0.7
CLN3-261ENST00000637686 DNAJC25Q9H1X3 360 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 MRPL17Q9NRX2 175 aaKnown RBP10.7□□□□□ -0.7
CLN3-261ENST00000637686 TUBGCP4Q9UGJ1 667 aa10.7□□□□□ -0.7
CLN3-261ENST00000637686 XIRP2A4UGR9 3374 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 SMTNL1A8MU46 457 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 H3BQ06 376 aaPredicted RBP10.69□□□□□ -0.7
CLN3-261ENST00000637686 TMEM189-UBE2V1I3L0A0 370 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 BIN1O00499 593 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 CLIC2O15247 247 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 EXTL3O43909 919 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 LILRB3O75022 631 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 CLASP2O75122 1294 aaKnown RBP10.69□□□□□ -0.7
CLN3-261ENST00000637686 LDHAP00338 332 aaKnown RBP10.69□□□□□ -0.7
CLN3-261ENST00000637686 URODP06132 367 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 NFICP08651 508 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 RPL9P32969 192 aaKnown RBP10.69□□□□□ -0.7
CLN3-261ENST00000637686 LTBRP36941 435 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 BRCC3P46736 316 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 GLUD2P49448 558 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 WNT7BP56706 349 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 MRPS5P82675 430 aaKnown RBP10.69□□□□□ -0.7
CLN3-261ENST00000637686 POU5F1Q01860 360 aaKnown RBP10.69□□□□□ -0.7
CLN3-261ENST00000637686 DSG1Q02413 1049 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 LRRC63Q05C16 580 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 DLX2Q07687 328 aaPredicted RBP10.69□□□□□ -0.7
CLN3-261ENST00000637686 PAK1Q13153 545 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 IQCB1Q15051 598 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 NFIL3Q16649 462 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 USP41Q3LFD5 358 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 FAM171A1Q5VUB5 890 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 KIAA0319Q5VV43 1072 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 KIAA1841Q6NSI8 718 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 LLGL2Q6P1M3 1020 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 GAS2L3Q86XJ1 694 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 CEP57Q86XR8 500 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 CD302Q8IX05 232 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 GPD1LQ8N335 351 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 C3orf58Q8NDZ4 430 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 ATXN2LQ8WWM7 1075 aaKnown RBP10.69□□□□□ -0.7
CLN3-261ENST00000637686 TSPAN18Q96SJ8 248 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 ASB7Q9H672 318 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 AGPAT3Q9NRZ7 376 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 CHST7Q9NS84 486 aa10.69□□□□□ -0.7
CLN3-261ENST00000637686 CGNQ9P2M7 1197 aaKnown RBP10.69□□□□□ -0.7
CLN3-261ENST00000637686 RWDD2AQ9UIY3 292 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms