RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 XPNPEP3Q9NQH7 507 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 TUBGCP4Q9UGJ1 667 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 PCSK1NQ9UHG2 260 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 CDC23Q9UJX2 597 aa11.3□□□□□ -0.6
VPS11-208ENST00000621676 WDR87Q6ZQQ6 2873 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 A0A0B4J269 797 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 STAM2O75886 525 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 CYP11B1P15538 503 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 RRM1P23921 792 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 RGS2P41220 211 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 YARSP54577 528 aaKnown RBP11.29□□□□□ -0.6
VPS11-208ENST00000621676 MFAP3P55082 362 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 PSMC1P62191 440 aaKnown RBP11.29□□□□□ -0.6
VPS11-208ENST00000621676 SP3Q02447 781 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 KCNA10Q16322 511 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 GLIPR1L2Q4G1C9 344 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 C1orf131Q8NDD1 294 aaKnown RBP11.29□□□□□ -0.6
VPS11-208ENST00000621676 GPR88Q9GZN0 384 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 MRFAP1Q9Y605 127 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 SDK1Q7Z5N4 2213 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 KAT6AQ92794 2004 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 GNA15P30679 374 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 HLTFQ14527 1009 aaKnown RBP eCLIP11.29□□□□□ -0.6
VPS11-208ENST00000621676 MXD4Q14582 209 aaPredicted RBP11.29□□□□□ -0.6
VPS11-208ENST00000621676 HP1BP3Q5SSJ5 553 aaPredicted RBP11.29□□□□□ -0.6
VPS11-208ENST00000621676 SAMD3Q8N6K7 520 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 OR6B3Q8NGW1 331 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 TMEM8AQ9HCN3 771 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 COG5Q9UP83 839 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 KIF13BQ9NQT8 1826 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 SLC16A3O15427 465 aaKnown RBP11.29□□□□□ -0.6
VPS11-208ENST00000621676 ADORA2BP29275 332 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 VEGFBP49765 207 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 PPTC7Q8NI37 304 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 HELQQ8TDG4 1101 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 RIN2Q8WYP3 895 aaPredicted RBP11.29□□□□□ -0.6
VPS11-208ENST00000621676 ZMAT2Q96NC0 199 aaKnown RBP11.29□□□□□ -0.6
VPS11-208ENST00000621676 TWNKQ96RR1 684 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 PAAF1Q9BRP4 392 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 ADPGKQ9BRR6 497 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 LRRC1Q9BTT6 524 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 STRA6Q9BX79 667 aa11.29□□□□□ -0.6
VPS11-208ENST00000621676 DMGDHQ9UI17 866 aaKnown RBP11.29□□□□□ -0.6
VPS11-208ENST00000621676 TRIP12Q14669 1992 aaPredicted RBP11.28□□□□□ -0.6
VPS11-208ENST00000621676 GRID2IPA4D2P6 1211 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 ZNF865P0CJ78 1059 aaPredicted RBP11.28□□□□□ -0.6
VPS11-208ENST00000621676 ARPP19P56211 112 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 MBTD1Q05BQ5 628 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 TFDP1Q14186 410 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 MTFR1Q15390 333 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 DUOXA2Q1HG44 320 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 ACOT1Q86TX2 421 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 CCDC170Q8IYT3 715 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 RBBP8NLQ8NC74 664 aaPredicted RBP11.28□□□□□ -0.6
VPS11-208ENST00000621676 RNF25Q96BH1 459 aaPredicted RBP11.28□□□□□ -0.6
VPS11-208ENST00000621676 FAM167AQ96KS9 214 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 NIFKQ9BYG3 293 aaKnown RBP11.28□□□□□ -0.6
VPS11-208ENST00000621676 PPP1R12CQ9BZL4 782 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 RBM12Q9NTZ6 932 aaKnown RBP11.28□□□□□ -0.6
VPS11-208ENST00000621676 CNOT8Q9UFF9 292 aaKnown RBP11.28□□□□□ -0.6
VPS11-208ENST00000621676 ANAPC7Q9UJX3 599 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 SMIM23A6NLE4 172 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 TULP2O00295 520 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 CITO14578 2027 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 OGTO15294 1046 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 CA8P35219 290 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 PSEN2P49810 448 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 CLCN6P51797 869 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 PTENP60484 403 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 RPS6KA1Q15418 735 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 EPS8L1Q8TE68 723 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 CEP89Q96ST8 783 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 OSBPL9Q96SU4 736 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 GAD1Q99259 594 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 NTPCRQ9BSD7 190 aaKnown RBP11.28□□□□□ -0.6
VPS11-208ENST00000621676 NUP85Q9BW27 656 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 TLR10Q9BXR5 811 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 VTA1Q9NP79 307 aa11.28□□□□□ -0.6
VPS11-208ENST00000621676 GON4LQ3T8J9 2241 aa11.27□□□□□ -0.6
VPS11-208ENST00000621676 A0A0U1RQG5 324 aaPredicted RBP11.27□□□□□ -0.6
VPS11-208ENST00000621676 TNNC2P02585 160 aa11.27□□□□□ -0.6
VPS11-208ENST00000621676 TCF4P15884 667 aa11.27□□□□□ -0.6
VPS11-208ENST00000621676 CD52P31358 61 aa11.27□□□□□ -0.6
VPS11-208ENST00000621676 RPL7AP62424 266 aaKnown RBP11.27□□□□□ -0.6
VPS11-208ENST00000621676 VSNL1P62760 191 aa11.27□□□□□ -0.6
VPS11-208ENST00000621676 ATP11AP98196 1134 aa11.27□□□□□ -0.6
VPS11-208ENST00000621676 SLC10A6Q3KNW5 377 aa11.27□□□□□ -0.6
VPS11-208ENST00000621676 GDF6Q6KF10 455 aaPredicted RBP11.27□□□□□ -0.6
VPS11-208ENST00000621676 ZNF784Q8NCA9 323 aaPredicted RBP11.27□□□□□ -0.6
VPS11-208ENST00000621676 RDM1Q8NG50 284 aa11.27□□□□□ -0.6
VPS11-208ENST00000621676 TCP11Q8WWU5 503 aa11.27□□□□□ -0.6
VPS11-208ENST00000621676 MRRFQ96E11 262 aaKnown RBP11.27□□□□□ -0.6
VPS11-208ENST00000621676 CISHQ9NSE2 258 aa11.27□□□□□ -0.6
VPS11-208ENST00000621676 SAE1Q9UBE0 346 aaPredicted RBP11.27□□□□□ -0.6
VPS11-208ENST00000621676 DIS3Q9Y2L1 958 aaKnown RBP11.27□□□□□ -0.6
VPS11-208ENST00000621676 DOCK1Q14185 1865 aa11.27□□□□□ -0.6
VPS11-208ENST00000621676 KNL1Q8NG31 2342 aa11.27□□□□□ -0.61
VPS11-208ENST00000621676 IGKV6D-21A0A0A0MT36 114 aa11.27□□□□□ -0.61
VPS11-208ENST00000621676 NT5C1B-RDH14C9J2C7 533 aa11.27□□□□□ -0.61
VPS11-208ENST00000621676 ACKR2O00590 384 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms