RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 KLRC2P26717 231 aa18.31■□□□□ 0.52
TRIM28-215ENST00000601150 CLUL1Q15846 466 aa18.31■□□□□ 0.52
TRIM28-215ENST00000601150 KMT5BQ4FZB7 885 aa18.31■□□□□ 0.52
TRIM28-215ENST00000601150 PTCRAQ6ISU1 281 aaPredicted RBP18.31■□□□□ 0.52
TRIM28-215ENST00000601150 KANK3Q6NY19 840 aa18.31■□□□□ 0.52
TRIM28-215ENST00000601150 ARMCX5Q6P1M9 558 aa18.31■□□□□ 0.52
TRIM28-215ENST00000601150 CD300LGQ6UXG3 332 aa18.31■□□□□ 0.52
TRIM28-215ENST00000601150 FMR1NBQ8N0W7 255 aaPredicted RBP18.31■□□□□ 0.52
TRIM28-215ENST00000601150 C3orf58Q8NDZ4 430 aa18.31■□□□□ 0.52
TRIM28-215ENST00000601150 SLC22A17Q8WUG5 538 aa18.31■□□□□ 0.52
TRIM28-215ENST00000601150 SCFD1Q8WVM8 642 aa18.31■□□□□ 0.52
TRIM28-215ENST00000601150 RIN2Q8WYP3 895 aaPredicted RBP18.31■□□□□ 0.52
TRIM28-215ENST00000601150 CASP10Q92851 521 aa18.31■□□□□ 0.52
TRIM28-215ENST00000601150 CCDC47Q96A33 483 aaKnown RBP18.31■□□□□ 0.52
TRIM28-215ENST00000601150 B3GALT6Q96L58 329 aa18.31■□□□□ 0.52
TRIM28-215ENST00000601150 CBWD1Q9BRT8 395 aa18.31■□□□□ 0.52
TRIM28-215ENST00000601150 FAM213AQ9BRX8 229 aa18.31■□□□□ 0.52
TRIM28-215ENST00000601150 TTPALQ9BTX7 342 aa18.31■□□□□ 0.52
TRIM28-215ENST00000601150 RXFP1Q9HBX9 757 aa18.31■□□□□ 0.52
TRIM28-215ENST00000601150 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.31■□□□□ 0.52
TRIM28-215ENST00000601150 FAM50BQ9Y247 325 aa18.31■□□□□ 0.52
TRIM28-215ENST00000601150 DERAQ9Y315 318 aa18.31■□□□□ 0.52
TRIM28-215ENST00000601150 MTCL1Q9Y4B5 1905 aaKnown RBP18.3■□□□□ 0.52
TRIM28-215ENST00000601150 EXTL3O43909 919 aa18.3■□□□□ 0.52
TRIM28-215ENST00000601150 IL18RAPO95256 599 aa18.3■□□□□ 0.52
TRIM28-215ENST00000601150 RPN1P04843 607 aaKnown RBP18.3■□□□□ 0.52
TRIM28-215ENST00000601150 ADH1AP07327 375 aa18.3■□□□□ 0.52
TRIM28-215ENST00000601150 PRR29P0C7W0 189 aa18.3■□□□□ 0.52
TRIM28-215ENST00000601150 IGFBP6P24592 240 aaPredicted RBP18.3■□□□□ 0.52
TRIM28-215ENST00000601150 CREMQ03060 361 aa18.3■□□□□ 0.52
TRIM28-215ENST00000601150 TMEM132DQ14C87 1099 aa18.3■□□□□ 0.52
TRIM28-215ENST00000601150 BMT2Q1RMZ1 405 aa18.3■□□□□ 0.52
TRIM28-215ENST00000601150 RTP2Q5QGT7 225 aa18.3■□□□□ 0.52
TRIM28-215ENST00000601150 JADE1Q6IE81 842 aa18.3■□□□□ 0.52
TRIM28-215ENST00000601150 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.3■□□□□ 0.52
TRIM28-215ENST00000601150 CEP57Q86XR8 500 aa18.3■□□□□ 0.52
TRIM28-215ENST00000601150 NELFCDQ8IXH7 590 aa18.3■□□□□ 0.52
TRIM28-215ENST00000601150 SAAL1Q96ER3 474 aa18.3■□□□□ 0.52
TRIM28-215ENST00000601150 GRXCR2A6NFK2 248 aa18.29■□□□□ 0.52
TRIM28-215ENST00000601150 TEX28O15482 410 aa18.29■□□□□ 0.52
TRIM28-215ENST00000601150 NFICP08651 508 aa18.29■□□□□ 0.52
TRIM28-215ENST00000601150 FGFR3P22607 806 aa18.29■□□□□ 0.52
TRIM28-215ENST00000601150 LRPAP1P30533 357 aa18.29■□□□□ 0.52
TRIM28-215ENST00000601150 SNRPFP62306 86 aaKnown RBP18.29■□□□□ 0.52
TRIM28-215ENST00000601150 FAM160A1Q05DH4 1040 aa18.29■□□□□ 0.52
TRIM28-215ENST00000601150 DPYDQ12882 1025 aa18.29■□□□□ 0.52
TRIM28-215ENST00000601150 SMAD4Q13485 552 aaKnown RBP18.29■□□□□ 0.52
TRIM28-215ENST00000601150 SPATA1Q5VX52 437 aa18.29■□□□□ 0.52
TRIM28-215ENST00000601150 ANKRD54Q6NXT1 300 aa18.29■□□□□ 0.52
TRIM28-215ENST00000601150 PDXDC1Q6P996 788 aa18.29■□□□□ 0.52
TRIM28-215ENST00000601150 BRSK2Q8IWQ3 736 aa18.29■□□□□ 0.52
TRIM28-215ENST00000601150 GPD1LQ8N335 351 aa18.29■□□□□ 0.52
TRIM28-215ENST00000601150 ENGASEQ8NFI3 743 aa18.29■□□□□ 0.52
TRIM28-215ENST00000601150 BEST2Q8NFU1 509 aa18.29■□□□□ 0.52
TRIM28-215ENST00000601150 ADAMTS19Q8TE59 1207 aa18.29■□□□□ 0.52
TRIM28-215ENST00000601150 PIK3R5Q8WYR1 880 aa18.29■□□□□ 0.52
TRIM28-215ENST00000601150 PCIF1Q9H4Z3 704 aa18.29■□□□□ 0.52
TRIM28-215ENST00000601150 RBAKQ9NYW8 714 aaPredicted RBP18.29■□□□□ 0.52
TRIM28-215ENST00000601150 FNIP2Q9P278 1114 aa18.29■□□□□ 0.52
TRIM28-215ENST00000601150 C2CD2Q9Y426 696 aa18.29■□□□□ 0.52
TRIM28-215ENST00000601150 NUB1Q9Y5A7 615 aa18.29■□□□□ 0.52
TRIM28-215ENST00000601150 GOLGA8IPA6NC78 632 aa18.28■□□□□ 0.52
TRIM28-215ENST00000601150 GOLGA8JA6NMD2 632 aa18.28■□□□□ 0.52
TRIM28-215ENST00000601150 I3L4J1 428 aa18.28■□□□□ 0.52
TRIM28-215ENST00000601150 TGFB1I1O43294 461 aa18.28■□□□□ 0.52
TRIM28-215ENST00000601150 MBTPS2O43462 519 aa18.28■□□□□ 0.52
TRIM28-215ENST00000601150 EPCAMP16422 314 aa18.28■□□□□ 0.52
TRIM28-215ENST00000601150 HOXB8P17481 243 aaPredicted RBP18.28■□□□□ 0.52
TRIM28-215ENST00000601150 BRCC3P46736 316 aa18.28■□□□□ 0.52
TRIM28-215ENST00000601150 CLCN4P51793 760 aa18.28■□□□□ 0.52
TRIM28-215ENST00000601150 STK4Q13043 487 aa18.28■□□□□ 0.52
TRIM28-215ENST00000601150 SNW1Q13573 536 aaKnown RBP18.28■□□□□ 0.52
TRIM28-215ENST00000601150 KNOP1Q1ED39 458 aaKnown RBP18.28■□□□□ 0.52
TRIM28-215ENST00000601150 PRSS55Q6UWB4 352 aaPredicted RBP18.28■□□□□ 0.52
TRIM28-215ENST00000601150 HS2ST1Q7LGA3 356 aa18.28■□□□□ 0.52
TRIM28-215ENST00000601150 SMRP1Q8NCR6 262 aa18.28■□□□□ 0.52
TRIM28-215ENST00000601150 KIAA0895Q8NCT3 520 aa18.28■□□□□ 0.52
TRIM28-215ENST00000601150 ZSWIM2Q8NEG5 633 aa18.28■□□□□ 0.52
TRIM28-215ENST00000601150 NOC3LQ8WTT2 800 aaKnown RBP18.28■□□□□ 0.52
TRIM28-215ENST00000601150 COL25A1Q9BXS0 654 aaPredicted RBP18.28■□□□□ 0.52
TRIM28-215ENST00000601150 AGPAT3Q9NRZ7 376 aa18.28■□□□□ 0.52
TRIM28-215ENST00000601150 DZANK1Q9NVP4 752 aa18.28■□□□□ 0.52
TRIM28-215ENST00000601150 CGNQ9P2M7 1197 aaKnown RBP18.28■□□□□ 0.52
TRIM28-215ENST00000601150 RHOBTB3O94955 611 aa18.27■□□□□ 0.52
TRIM28-215ENST00000601150 IL9P15248 144 aa18.27■□□□□ 0.52
TRIM28-215ENST00000601150 MCM4P33991 863 aa18.27■□□□□ 0.52
TRIM28-215ENST00000601150 GUCY2FP51841 1108 aa18.27■□□□□ 0.52
TRIM28-215ENST00000601150 PSMD5Q16401 504 aa18.27■□□□□ 0.52
TRIM28-215ENST00000601150 SYCE2Q6PIF2 218 aa18.27■□□□□ 0.52
TRIM28-215ENST00000601150 NT5DC4Q86YG4 428 aa18.27■□□□□ 0.52
TRIM28-215ENST00000601150 LNX1Q8TBB1 728 aaPredicted RBP18.27■□□□□ 0.52
TRIM28-215ENST00000601150 KIAA1586Q9HCI6 787 aa18.27■□□□□ 0.52
TRIM28-215ENST00000601150 HSPBP1Q9NZL4 362 aa18.27■□□□□ 0.52
TRIM28-215ENST00000601150 XIRP2A4UGR9 3374 aa18.26■□□□□ 0.51
TRIM28-215ENST00000601150 ZNF233A6NK53 670 aa18.26■□□□□ 0.51
TRIM28-215ENST00000601150 C1RP00736 705 aa18.26■□□□□ 0.51
TRIM28-215ENST00000601150 TKTP29401 623 aaKnown RBP18.26■□□□□ 0.51
TRIM28-215ENST00000601150 KCNB1Q14721 858 aa18.26■□□□□ 0.51
TRIM28-215ENST00000601150 EFCAB13Q8IY85 973 aa18.26■□□□□ 0.51
TRIM28-215ENST00000601150 TMEM130Q8N3G9 435 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms