RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 TRIP11Q15643 1979 aa16.53■□□□□ 0.24
LIG1-219ENST00000600055 EXTL3O43909 919 aa16.52■□□□□ 0.24
LIG1-219ENST00000600055 RHOBTB3O94955 611 aa16.52■□□□□ 0.24
LIG1-219ENST00000600055 CNPP09543 421 aaKnown RBP16.52■□□□□ 0.24
LIG1-219ENST00000600055 RPL9P32969 192 aaKnown RBP16.52■□□□□ 0.24
LIG1-219ENST00000600055 NDUFV1P49821 464 aa16.52■□□□□ 0.24
LIG1-219ENST00000600055 KCNC3Q14003 757 aa16.52■□□□□ 0.24
LIG1-219ENST00000600055 KNOP1Q1ED39 458 aaKnown RBP16.52■□□□□ 0.24
LIG1-219ENST00000600055 RTP2Q5QGT7 225 aa16.52■□□□□ 0.24
LIG1-219ENST00000600055 KIAA1841Q6NSI8 718 aa16.52■□□□□ 0.24
LIG1-219ENST00000600055 PRSS55Q6UWB4 352 aaPredicted RBP16.52■□□□□ 0.24
LIG1-219ENST00000600055 CEP57Q86XR8 500 aa16.52■□□□□ 0.24
LIG1-219ENST00000600055 CD302Q8IX05 232 aa16.52■□□□□ 0.24
LIG1-219ENST00000600055 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.52■□□□□ 0.24
LIG1-219ENST00000600055 RIN2Q8WYP3 895 aaPredicted RBP16.52■□□□□ 0.24
LIG1-219ENST00000600055 KLHL5Q96PQ7 755 aa16.52■□□□□ 0.24
LIG1-219ENST00000600055 HSPBP1Q9NZL4 362 aa16.52■□□□□ 0.24
LIG1-219ENST00000600055 UBQLN1Q9UMX0 589 aaKnown RBP16.52■□□□□ 0.24
LIG1-219ENST00000600055 XIRP2A4UGR9 3374 aa16.52■□□□□ 0.23
LIG1-219ENST00000600055 SPTBN5Q9NRC6 3674 aaKnown RBP16.51■□□□□ 0.23
LIG1-219ENST00000600055 PPEF2O14830 753 aa16.51■□□□□ 0.23
LIG1-219ENST00000600055 LDHAP00338 332 aaKnown RBP16.51■□□□□ 0.23
LIG1-219ENST00000600055 RPL17P18621 184 aaKnown RBP16.51■□□□□ 0.23
LIG1-219ENST00000600055 LRPAP1P30533 357 aa16.51■□□□□ 0.23
LIG1-219ENST00000600055 TMEM132DQ14C87 1099 aa16.51■□□□□ 0.23
LIG1-219ENST00000600055 LEXMQ3ZCV2 418 aa16.51■□□□□ 0.23
LIG1-219ENST00000600055 SPATA1Q5VX52 437 aa16.51■□□□□ 0.23
LIG1-219ENST00000600055 CBWD2Q8IUF1 395 aa16.51■□□□□ 0.23
LIG1-219ENST00000600055 BRSK2Q8IWQ3 736 aa16.51■□□□□ 0.23
LIG1-219ENST00000600055 EFCAB13Q8IY85 973 aa16.51■□□□□ 0.23
LIG1-219ENST00000600055 GPD1LQ8N335 351 aa16.51■□□□□ 0.23
LIG1-219ENST00000600055 CCDC47Q96A33 483 aaKnown RBP16.51■□□□□ 0.23
LIG1-219ENST00000600055 FAM84AQ96KN4 292 aa16.51■□□□□ 0.23
LIG1-219ENST00000600055 TIGD1Q96MW7 591 aa16.51■□□□□ 0.23
LIG1-219ENST00000600055 TTPALQ9BTX7 342 aa16.51■□□□□ 0.23
LIG1-219ENST00000600055 ASB7Q9H672 318 aa16.51■□□□□ 0.23
LIG1-219ENST00000600055 RBAKQ9NYW8 714 aaPredicted RBP16.51■□□□□ 0.23
LIG1-219ENST00000600055 MAPK8IP1Q9UQF2 711 aa16.51■□□□□ 0.23
LIG1-219ENST00000600055 HCFC2Q9Y5Z7 792 aa16.51■□□□□ 0.23
LIG1-219ENST00000600055 CITO14578 2027 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 TEX28O15482 410 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 PRPF40AO75400 957 aaKnown RBP16.5■□□□□ 0.23
LIG1-219ENST00000600055 IL18RAPO95256 599 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 EPCAMP16422 314 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 CYP3A5P20815 502 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 KLRC2P26717 231 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 TKTP29401 623 aaKnown RBP16.5■□□□□ 0.23
LIG1-219ENST00000600055 CYP2J2P51589 502 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 POU5F1Q01860 360 aaKnown RBP16.5■□□□□ 0.23
LIG1-219ENST00000600055 ELAVL2Q12926 359 aaKnown RBP16.5■□□□□ 0.23
LIG1-219ENST00000600055 KCNB1Q14721 858 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 AAK1Q2M2I8 961 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 HS2ST1Q7LGA3 356 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 GLYCTKQ8IVS8 523 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 RDH13Q8NBN7 331 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 BEST2Q8NFU1 509 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 SLC22A17Q8WUG5 538 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 CCDC34Q96HJ3 373 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 MSLNLQ96KJ4 702 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 TSPAN18Q96SJ8 248 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 EMILIN2Q9BXX0 1053 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 KCTD10Q9H3F6 313 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 RXFP1Q9HBX9 757 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 PDE11AQ9HCR9 933 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 SSX2IPQ9Y2D8 614 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 DERAQ9Y315 318 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 UNC80Q8N2C7 3258 aa16.5■□□□□ 0.23
LIG1-219ENST00000600055 KIAA0391O15091 583 aaKnown RBP16.49■□□□□ 0.23
LIG1-219ENST00000600055 XPOTO43592 962 aaKnown RBP16.49■□□□□ 0.23
LIG1-219ENST00000600055 BMP1P13497 986 aa16.49■□□□□ 0.23
LIG1-219ENST00000600055 FGFR3P22607 806 aa16.49■□□□□ 0.23
LIG1-219ENST00000600055 MCM4P33991 863 aa16.49■□□□□ 0.23
LIG1-219ENST00000600055 TJAP1Q5JTD0 557 aa16.49■□□□□ 0.23
LIG1-219ENST00000600055 TMEM184AQ6ZMB5 413 aa16.49■□□□□ 0.23
LIG1-219ENST00000600055 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.49■□□□□ 0.23
LIG1-219ENST00000600055 SMYD4Q8IYR2 804 aaPredicted RBP16.49■□□□□ 0.23
LIG1-219ENST00000600055 LNX1Q8TBB1 728 aaPredicted RBP16.49■□□□□ 0.23
LIG1-219ENST00000600055 FBXL18Q96ME1 805 aa16.49■□□□□ 0.23
LIG1-219ENST00000600055 APOL5Q9BWW9 433 aa16.49■□□□□ 0.23
LIG1-219ENST00000600055 CD207Q9UJ71 328 aa16.49■□□□□ 0.23
LIG1-219ENST00000600055 C2CD2Q9Y426 696 aa16.49■□□□□ 0.23
LIG1-219ENST00000600055 NUB1Q9Y5A7 615 aa16.49■□□□□ 0.23
LIG1-219ENST00000600055 PCDHA5Q9Y5H7 936 aa16.49■□□□□ 0.23
LIG1-219ENST00000600055 ZNF233A6NK53 670 aa16.48■□□□□ 0.23
LIG1-219ENST00000600055 ADAM12O43184 909 aa16.48■□□□□ 0.23
LIG1-219ENST00000600055 TRAPPC3O43617 180 aa16.48■□□□□ 0.23
LIG1-219ENST00000600055 KINO60870 393 aaKnown RBP16.48■□□□□ 0.23
LIG1-219ENST00000600055 CLCN4P51793 760 aa16.48■□□□□ 0.23
LIG1-219ENST00000600055 UBE2HP62256 183 aa16.48■□□□□ 0.23
LIG1-219ENST00000600055 SNRPFP62306 86 aaKnown RBP16.48■□□□□ 0.23
LIG1-219ENST00000600055 TFAMQ00059 246 aaKnown RBP16.48■□□□□ 0.23
LIG1-219ENST00000600055 PSMD5Q16401 504 aa16.48■□□□□ 0.23
LIG1-219ENST00000600055 C9orf57Q5W0N0 161 aa16.48■□□□□ 0.23
LIG1-219ENST00000600055 LMBRD2Q68DH5 695 aaPredicted RBP16.48■□□□□ 0.23
LIG1-219ENST00000600055 SCARA3Q6AZY7 606 aa16.48■□□□□ 0.23
LIG1-219ENST00000600055 PTCRAQ6ISU1 281 aaPredicted RBP16.48■□□□□ 0.23
LIG1-219ENST00000600055 ANKRD54Q6NXT1 300 aa16.48■□□□□ 0.23
LIG1-219ENST00000600055 SYCE2Q6PIF2 218 aa16.48■□□□□ 0.23
LIG1-219ENST00000600055 PIK3R5Q8WYR1 880 aa16.48■□□□□ 0.23
LIG1-219ENST00000600055 DPP3Q9NY33 737 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms