RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 DPP3Q9NY33 737 aa16.65■□□□□ 0.26
UPF1-206ENST00000598471 KLK14Q9P0G3 267 aa16.65■□□□□ 0.26
UPF1-206ENST00000598471 MYO6Q9UM54 1294 aa16.65■□□□□ 0.26
UPF1-206ENST00000598471 CITO14578 2027 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 SMIM28A0A1B0GU29 152 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 C9IYK1 514 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 EPHB6O15197 1021 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 NOL4O94818 638 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 VNN1O95497 513 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 KRT19P08727 400 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 CYP3A5P20815 502 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 IBSPP21815 317 aaPredicted RBP16.64■□□□□ 0.25
UPF1-206ENST00000598471 MLH1P40692 756 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 MFAP3P55082 362 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 RBP5P82980 135 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 LRMPQ12912 555 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 RAPGEF1Q13905 1077 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 GPNMBQ14956 572 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 SGSM1Q2NKQ1 1148 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 CNKSR3Q6P9H4 555 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 DEFB128Q7Z7B8 93 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 LRRC8AQ8IWT6 810 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 TMEM199Q8N511 208 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 C1orf127Q8N9H9 656 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 TC2NQ8N9U0 490 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 LINC01599Q8WXQ3 324 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 SEMA4DQ92854 862 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 ELAC1Q9H777 363 aaKnown RBP16.64■□□□□ 0.25
UPF1-206ENST00000598471 ABHD10Q9NUJ1 306 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 DNAJC12Q9UKB3 198 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 FHOD1Q9Y613 1164 aa16.64■□□□□ 0.25
UPF1-206ENST00000598471 ANK1P16157 1881 aa16.63■□□□□ 0.25
UPF1-206ENST00000598471 EVI5O60447 810 aa16.63■□□□□ 0.25
UPF1-206ENST00000598471 ITGB3P05106 788 aa16.63■□□□□ 0.25
UPF1-206ENST00000598471 PFKMP08237 780 aa16.63■□□□□ 0.25
UPF1-206ENST00000598471 TBXAS1P24557 533 aaPredicted RBP16.63■□□□□ 0.25
UPF1-206ENST00000598471 ATICP31939 592 aa16.63■□□□□ 0.25
UPF1-206ENST00000598471 NOP14P78316 857 aaKnown RBP16.63■□□□□ 0.25
UPF1-206ENST00000598471 FAM189BP81408 668 aa16.63■□□□□ 0.25
UPF1-206ENST00000598471 ZNF699Q32M78 642 aa16.63■□□□□ 0.25
UPF1-206ENST00000598471 GLRA4Q5JXX5 417 aa16.63■□□□□ 0.25
UPF1-206ENST00000598471 IQCEQ6IPM2 695 aa16.63■□□□□ 0.25
UPF1-206ENST00000598471 DPY19L2P1Q6NXN4 242 aa16.63■□□□□ 0.25
UPF1-206ENST00000598471 PDXDC1Q6P996 788 aa16.63■□□□□ 0.25
UPF1-206ENST00000598471 GLB1LQ6UWU2 654 aa16.63■□□□□ 0.25
UPF1-206ENST00000598471 AGMOQ6ZNB7 445 aa16.63■□□□□ 0.25
UPF1-206ENST00000598471 RRAGAQ7L523 313 aa16.63■□□□□ 0.25
UPF1-206ENST00000598471 ZNF598Q86UK7 904 aaKnown RBP16.63■□□□□ 0.25
UPF1-206ENST00000598471 C7orf61Q8IZ16 206 aa16.63■□□□□ 0.25
UPF1-206ENST00000598471 PPM1KQ8N3J5 372 aa16.63■□□□□ 0.25
UPF1-206ENST00000598471 LPPQ93052 612 aa16.63■□□□□ 0.25
UPF1-206ENST00000598471 FAM84AQ96KN4 292 aa16.63■□□□□ 0.25
UPF1-206ENST00000598471 ZMAT2Q96NC0 199 aaKnown RBP16.63■□□□□ 0.25
UPF1-206ENST00000598471 GAD1Q99259 594 aa16.63■□□□□ 0.25
UPF1-206ENST00000598471 DNAJC7Q99615 494 aa16.63■□□□□ 0.25
UPF1-206ENST00000598471 STK33Q9BYT3 514 aa16.63■□□□□ 0.25
UPF1-206ENST00000598471 UBE2TQ9NPD8 197 aaPredicted RBP16.63■□□□□ 0.25
UPF1-206ENST00000598471 TMEM161AQ9NX61 479 aa16.63■□□□□ 0.25
UPF1-206ENST00000598471 LRFN2Q9ULH4 789 aa16.63■□□□□ 0.25
UPF1-206ENST00000598471 TRIM43BA6NCK2 446 aa16.62■□□□□ 0.25
UPF1-206ENST00000598471 ARL5CA6NH57 179 aa16.62■□□□□ 0.25
UPF1-206ENST00000598471 ENPP3O14638 875 aa16.62■□□□□ 0.25
UPF1-206ENST00000598471 HOXA2O43364 376 aa16.62■□□□□ 0.25
UPF1-206ENST00000598471 ASS1P00966 412 aaKnown RBP16.62■□□□□ 0.25
UPF1-206ENST00000598471 THP07101 528 aa16.62■□□□□ 0.25
UPF1-206ENST00000598471 P4HA1P13674 534 aa16.62■□□□□ 0.25
UPF1-206ENST00000598471 ATF7P17544 494 aaPredicted RBP16.62■□□□□ 0.25
UPF1-206ENST00000598471 POLR2BP30876 1174 aaKnown RBP16.62■□□□□ 0.25
UPF1-206ENST00000598471 STAT1P42224 750 aa16.62■□□□□ 0.25
UPF1-206ENST00000598471 APBA1Q02410 837 aa16.62■□□□□ 0.25
UPF1-206ENST00000598471 GCNT1Q02742 428 aa16.62■□□□□ 0.25
UPF1-206ENST00000598471 GOLGA8FQ08AF8 430 aa16.62■□□□□ 0.25
UPF1-206ENST00000598471 GOLGA8DPQ0D2H9 430 aa16.62■□□□□ 0.25
UPF1-206ENST00000598471 IKBKEQ14164 716 aa16.62■□□□□ 0.25
UPF1-206ENST00000598471 ARID5BQ14865 1188 aa16.62■□□□□ 0.25
UPF1-206ENST00000598471 ZBTB6Q15916 424 aa16.62■□□□□ 0.25
UPF1-206ENST00000598471 SFMBT2Q5VUG0 894 aa16.62■□□□□ 0.25
UPF1-206ENST00000598471 MFSD5Q6N075 450 aa16.62■□□□□ 0.25
UPF1-206ENST00000598471 PHLDB3Q6NSJ2 640 aa16.62■□□□□ 0.25
UPF1-206ENST00000598471 RTN4RL1Q86UN2 441 aaPredicted RBP16.62■□□□□ 0.25
UPF1-206ENST00000598471 RPUSD2Q8IZ73 545 aaKnown RBP16.62■□□□□ 0.25
UPF1-206ENST00000598471 URGCPQ8TCY9 931 aa16.62■□□□□ 0.25
UPF1-206ENST00000598471 RSPH1Q8WYR4 309 aa16.62■□□□□ 0.25
UPF1-206ENST00000598471 BAP1Q92560 729 aa16.62■□□□□ 0.25
UPF1-206ENST00000598471 SYN2Q92777 582 aaPredicted RBP16.62■□□□□ 0.25
UPF1-206ENST00000598471 TRIM43Q96BQ3 446 aaPredicted RBP16.62■□□□□ 0.25
UPF1-206ENST00000598471 PI4K2AQ9BTU6 479 aa16.62■□□□□ 0.25
UPF1-206ENST00000598471 NAA15Q9BXJ9 866 aaKnown RBP16.62■□□□□ 0.25
UPF1-206ENST00000598471 AGAP1Q9UPQ3 857 aa16.62■□□□□ 0.25
UPF1-206ENST00000598471 LRRC53A6NM62 1247 aa16.61■□□□□ 0.25
UPF1-206ENST00000598471 EFCAB14O75071 495 aa16.61■□□□□ 0.25
UPF1-206ENST00000598471 STAU1O95793 577 aaKnown RBP16.61■□□□□ 0.25
UPF1-206ENST00000598471 CST3P01034 146 aaPredicted RBP16.61■□□□□ 0.25
UPF1-206ENST00000598471 CCDC172P0C7W6 258 aa16.61■□□□□ 0.25
UPF1-206ENST00000598471 MYL6P60660 151 aa16.61■□□□□ 0.25
UPF1-206ENST00000598471 MYO1EQ12965 1108 aa16.61■□□□□ 0.25
UPF1-206ENST00000598471 GRIK3Q13003 919 aa16.61■□□□□ 0.25
UPF1-206ENST00000598471 ARHGAP44Q17R89 818 aa16.61■□□□□ 0.25
UPF1-206ENST00000598471 ZNF667Q5HYK9 610 aa16.61■□□□□ 0.25
UPF1-206ENST00000598471 SMYD5Q6GMV2 418 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms