RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 DCLRE1AQ6PJP8 1040 aa16.47■□□□□ 0.23
TRIM28-205ENST00000595028 PRSS55Q6UWB4 352 aaPredicted RBP16.47■□□□□ 0.23
TRIM28-205ENST00000595028 CD300LGQ6UXG3 332 aa16.47■□□□□ 0.23
TRIM28-205ENST00000595028 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.47■□□□□ 0.23
TRIM28-205ENST00000595028 ZNF720Q7Z2F6 126 aa16.47■□□□□ 0.23
TRIM28-205ENST00000595028 DDX27Q96GQ7 796 aaKnown RBP16.47■□□□□ 0.23
TRIM28-205ENST00000595028 MSTO1Q9BUK6 570 aa16.47■□□□□ 0.23
TRIM28-205ENST00000595028 CUEDC2Q9H467 287 aa16.47■□□□□ 0.23
TRIM28-205ENST00000595028 MRPL44Q9H9J2 332 aaKnown RBP16.47■□□□□ 0.23
TRIM28-205ENST00000595028 MAN1C1Q9NR34 630 aa16.47■□□□□ 0.23
TRIM28-205ENST00000595028 CFAP45Q9UL16 551 aa16.47■□□□□ 0.23
TRIM28-205ENST00000595028 A0A0B4J269 797 aa16.46■□□□□ 0.23
TRIM28-205ENST00000595028 TTC26A0AVF1 554 aa16.46■□□□□ 0.23
TRIM28-205ENST00000595028 SPDYE4A6NLX3 237 aa16.46■□□□□ 0.23
TRIM28-205ENST00000595028 IDEP14735 1019 aa16.46■□□□□ 0.23
TRIM28-205ENST00000595028 FGFR3P22607 806 aa16.46■□□□□ 0.23
TRIM28-205ENST00000595028 IGFBP6P24592 240 aaPredicted RBP16.46■□□□□ 0.23
TRIM28-205ENST00000595028 MTHFRP42898 656 aa16.46■□□□□ 0.23
TRIM28-205ENST00000595028 VCPP55072 806 aaKnown RBP16.46■□□□□ 0.23
TRIM28-205ENST00000595028 PPP2R3AQ06190 1150 aa16.46■□□□□ 0.23
TRIM28-205ENST00000595028 PSMD5Q16401 504 aa16.46■□□□□ 0.23
TRIM28-205ENST00000595028 CEP57Q86XR8 500 aa16.46■□□□□ 0.23
TRIM28-205ENST00000595028 C18orf25Q96B23 403 aaPredicted RBP16.46■□□□□ 0.23
TRIM28-205ENST00000595028 DHX58Q96C10 678 aa16.46■□□□□ 0.23
TRIM28-205ENST00000595028 RIPOR3Q96MK2 946 aa16.46■□□□□ 0.23
TRIM28-205ENST00000595028 STRA6Q9BX79 667 aa16.46■□□□□ 0.23
TRIM28-205ENST00000595028 POMKQ9H5K3 350 aa16.46■□□□□ 0.23
TRIM28-205ENST00000595028 PLEKHA5Q9HAU0 1116 aa16.46■□□□□ 0.23
TRIM28-205ENST00000595028 KBTBD4Q9NVX7 518 aa16.46■□□□□ 0.23
TRIM28-205ENST00000595028 TBC1D7Q9P0N9 293 aa16.46■□□□□ 0.23
TRIM28-205ENST00000595028 TUBGCP4Q9UGJ1 667 aa16.46■□□□□ 0.23
TRIM28-205ENST00000595028 PCDHA7Q9UN72 937 aa16.46■□□□□ 0.23
TRIM28-205ENST00000595028 ZDHHC9Q9Y397 364 aa16.46■□□□□ 0.23
TRIM28-205ENST00000595028 TCHHQ07283 1943 aa16.46■□□□□ 0.23
TRIM28-205ENST00000595028 TISP43B9A030 160 aa16.45■□□□□ 0.22
TRIM28-205ENST00000595028 ANKRD63C9JTQ0 380 aa16.45■□□□□ 0.22
TRIM28-205ENST00000595028 C1RP00736 705 aa16.45■□□□□ 0.22
TRIM28-205ENST00000595028 WEE2P0C1S8 567 aa16.45■□□□□ 0.22
TRIM28-205ENST00000595028 RPL17P18621 184 aaKnown RBP16.45■□□□□ 0.22
TRIM28-205ENST00000595028 ALCAMQ13740 583 aa16.45■□□□□ 0.22
TRIM28-205ENST00000595028 ENOX2Q16206 610 aaKnown RBP16.45■□□□□ 0.22
TRIM28-205ENST00000595028 RESP18Q5W5W9 173 aa16.45■□□□□ 0.22
TRIM28-205ENST00000595028 KANK3Q6NY19 840 aa16.45■□□□□ 0.22
TRIM28-205ENST00000595028 PDXDC1Q6P996 788 aa16.45■□□□□ 0.22
TRIM28-205ENST00000595028 ELMSAN1Q6PJG2 1045 aa16.45■□□□□ 0.22
TRIM28-205ENST00000595028 TMC5Q6UXY8 1006 aa16.45■□□□□ 0.22
TRIM28-205ENST00000595028 GLYCTKQ8IVS8 523 aa16.45■□□□□ 0.22
TRIM28-205ENST00000595028 IQUBQ8NA54 791 aa16.45■□□□□ 0.22
TRIM28-205ENST00000595028 CMASQ8NFW8 434 aaPredicted RBP16.45■□□□□ 0.22
TRIM28-205ENST00000595028 LNX1Q8TBB1 728 aaPredicted RBP16.45■□□□□ 0.22
TRIM28-205ENST00000595028 FEZF2Q8TBJ5 459 aa16.45■□□□□ 0.22
TRIM28-205ENST00000595028 RPGRIP1Q96KN7 1286 aa16.45■□□□□ 0.22
TRIM28-205ENST00000595028 LRRC27Q9C0I9 530 aa16.45■□□□□ 0.22
TRIM28-205ENST00000595028 IRF2BPLQ9H1B7 796 aa16.45■□□□□ 0.22
TRIM28-205ENST00000595028 MAGEF1Q9HAY2 307 aa16.45■□□□□ 0.22
TRIM28-205ENST00000595028 DPP7Q9UHL4 492 aa16.45■□□□□ 0.22
TRIM28-205ENST00000595028 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.45■□□□□ 0.22
TRIM28-205ENST00000595028 STYXL1Q9Y6J8 313 aa16.45■□□□□ 0.22
TRIM28-205ENST00000595028 I3L4J1 428 aa16.44■□□□□ 0.22
TRIM28-205ENST00000595028 TGM5O43548 720 aa16.44■□□□□ 0.22
TRIM28-205ENST00000595028 TRAPPC3O43617 180 aa16.44■□□□□ 0.22
TRIM28-205ENST00000595028 GCNT3O95395 438 aa16.44■□□□□ 0.22
TRIM28-205ENST00000595028 TKTP29401 623 aaKnown RBP16.44■□□□□ 0.22
TRIM28-205ENST00000595028 RPL9P32969 192 aaKnown RBP16.44■□□□□ 0.22
TRIM28-205ENST00000595028 BRCC3P46736 316 aa16.44■□□□□ 0.22
TRIM28-205ENST00000595028 CASP5P51878 434 aa16.44■□□□□ 0.22
TRIM28-205ENST00000595028 SPAG1Q07617 926 aa16.44■□□□□ 0.22
TRIM28-205ENST00000595028 L1TD1Q5T7N2 865 aaKnown RBP16.44■□□□□ 0.22
TRIM28-205ENST00000595028 SLFN12LQ6IEE8 588 aa16.44■□□□□ 0.22
TRIM28-205ENST00000595028 ASCL5Q7RTU5 278 aa16.44■□□□□ 0.22
TRIM28-205ENST00000595028 ERMP1Q7Z2K6 904 aa16.44■□□□□ 0.22
TRIM28-205ENST00000595028 GPR149Q86SP6 731 aa16.44■□□□□ 0.22
TRIM28-205ENST00000595028 PALB2Q86YC2 1186 aa16.44■□□□□ 0.22
TRIM28-205ENST00000595028 CCDC65Q8IXS2 484 aa16.44■□□□□ 0.22
TRIM28-205ENST00000595028 HDAC7Q8WUI4 952 aa16.44■□□□□ 0.22
TRIM28-205ENST00000595028 STAMQ92783 540 aa16.44■□□□□ 0.22
TRIM28-205ENST00000595028 FGFBP2Q9BYJ0 223 aa16.44■□□□□ 0.22
TRIM28-205ENST00000595028 TRIM9Q9C026 710 aa16.44■□□□□ 0.22
TRIM28-205ENST00000595028 IKZF4Q9H2S9 585 aa16.44■□□□□ 0.22
TRIM28-205ENST00000595028 RPF1Q9H9Y2 349 aaKnown RBP16.44■□□□□ 0.22
TRIM28-205ENST00000595028 PANK4Q9NVE7 773 aa16.44■□□□□ 0.22
TRIM28-205ENST00000595028 FAM13BQ9NYF5 915 aa16.44■□□□□ 0.22
TRIM28-205ENST00000595028 MTRRQ9UBK8 725 aa16.44■□□□□ 0.22
TRIM28-205ENST00000595028 CPSF3Q9UKF6 684 aaKnown RBP16.44■□□□□ 0.22
TRIM28-205ENST00000595028 RCOR1Q9UKL0 485 aa16.44■□□□□ 0.22
TRIM28-205ENST00000595028 UBQLN1Q9UMX0 589 aaKnown RBP16.44■□□□□ 0.22
TRIM28-205ENST00000595028 EXOC7Q9UPT5 735 aa16.44■□□□□ 0.22
TRIM28-205ENST00000595028 LACTBL1A8MY62 500 aa16.43■□□□□ 0.22
TRIM28-205ENST00000595028 H0Y858 1186 aa16.43■□□□□ 0.22
TRIM28-205ENST00000595028 ADRB2P07550 413 aa16.43■□□□□ 0.22
TRIM28-205ENST00000595028 MYBP10242 640 aa16.43■□□□□ 0.22
TRIM28-205ENST00000595028 CYP3A5P20815 502 aa16.43■□□□□ 0.22
TRIM28-205ENST00000595028 AVPR2P30518 371 aa16.43■□□□□ 0.22
TRIM28-205ENST00000595028 KCNA1Q09470 495 aa16.43■□□□□ 0.22
TRIM28-205ENST00000595028 BECN1Q14457 450 aa16.43■□□□□ 0.22
TRIM28-205ENST00000595028 ATAT1Q5SQI0 421 aa16.43■□□□□ 0.22
TRIM28-205ENST00000595028 ADALQ6DHV7 355 aa16.43■□□□□ 0.22
TRIM28-205ENST00000595028 C15orf39Q6ZRI6 1047 aa16.43■□□□□ 0.22
TRIM28-205ENST00000595028 KIF12Q96FN5 646 aa16.43■□□□□ 0.22
TRIM28-205ENST00000595028 ACCSQ96QU6 501 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms