RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 C2CD2LO14523 706 aa16.31■□□□□ 0.2
UPF1-202ENST00000594243 TGFB1I1O43294 461 aa16.31■□□□□ 0.2
UPF1-202ENST00000594243 KINO60870 393 aaKnown RBP16.31■□□□□ 0.2
UPF1-202ENST00000594243 LILRB3O75022 631 aa16.31■□□□□ 0.2
UPF1-202ENST00000594243 SMC2O95347 1197 aa16.31■□□□□ 0.2
UPF1-202ENST00000594243 KCNA5P22460 613 aa16.31■□□□□ 0.2
UPF1-202ENST00000594243 LRPAP1P30533 357 aa16.31■□□□□ 0.2
UPF1-202ENST00000594243 NDUFV1P49821 464 aa16.31■□□□□ 0.2
UPF1-202ENST00000594243 UBE2HP62256 183 aa16.31■□□□□ 0.2
UPF1-202ENST00000594243 CREMQ03060 361 aa16.31■□□□□ 0.2
UPF1-202ENST00000594243 TMEM132DQ14C87 1099 aa16.31■□□□□ 0.2
UPF1-202ENST00000594243 FAM171A1Q5VUB5 890 aa16.31■□□□□ 0.2
UPF1-202ENST00000594243 SPATA1Q5VX52 437 aa16.31■□□□□ 0.2
UPF1-202ENST00000594243 JADE1Q6IE81 842 aa16.31■□□□□ 0.2
UPF1-202ENST00000594243 PDXDC1Q6P996 788 aa16.31■□□□□ 0.2
UPF1-202ENST00000594243 TMEM184AQ6ZMB5 413 aa16.31■□□□□ 0.2
UPF1-202ENST00000594243 PPFIBP1Q86W92 1011 aa16.31■□□□□ 0.2
UPF1-202ENST00000594243 KIAA0895Q8NCT3 520 aa16.31■□□□□ 0.2
UPF1-202ENST00000594243 NOC3LQ8WTT2 800 aaKnown RBP16.31■□□□□ 0.2
UPF1-202ENST00000594243 KLHL5Q96PQ7 755 aa16.31■□□□□ 0.2
UPF1-202ENST00000594243 TTPALQ9BTX7 342 aa16.31■□□□□ 0.2
UPF1-202ENST00000594243 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.31■□□□□ 0.2
UPF1-202ENST00000594243 AGPAT3Q9NRZ7 376 aa16.31■□□□□ 0.2
UPF1-202ENST00000594243 RBAKQ9NYW8 714 aaPredicted RBP16.31■□□□□ 0.2
UPF1-202ENST00000594243 HSPBP1Q9NZL4 362 aa16.31■□□□□ 0.2
UPF1-202ENST00000594243 NUB1Q9Y5A7 615 aa16.31■□□□□ 0.2
UPF1-202ENST00000594243 GOLGA8IPA6NC78 632 aa16.3■□□□□ 0.2
UPF1-202ENST00000594243 ZNF233A6NK53 670 aa16.3■□□□□ 0.2
UPF1-202ENST00000594243 GOLGA8JA6NMD2 632 aa16.3■□□□□ 0.2
UPF1-202ENST00000594243 LINC01565O15544 149 aa16.3■□□□□ 0.2
UPF1-202ENST00000594243 CLASP2O75122 1294 aaKnown RBP16.3■□□□□ 0.2
UPF1-202ENST00000594243 GADD45BO75293 160 aaPredicted RBP16.3■□□□□ 0.2
UPF1-202ENST00000594243 KLRC2P26717 231 aa16.3■□□□□ 0.2
UPF1-202ENST00000594243 LTBRP36941 435 aa16.3■□□□□ 0.2
UPF1-202ENST00000594243 TFF2Q03403 129 aa16.3■□□□□ 0.2
UPF1-202ENST00000594243 PNOCQ13519 176 aa16.3■□□□□ 0.2
UPF1-202ENST00000594243 SURF1Q15526 300 aa16.3■□□□□ 0.2
UPF1-202ENST00000594243 PUS10Q3MIT2 529 aaKnown RBP16.3■□□□□ 0.2
UPF1-202ENST00000594243 LEXMQ3ZCV2 418 aa16.3■□□□□ 0.2
UPF1-202ENST00000594243 CEP57Q86XR8 500 aa16.3■□□□□ 0.2
UPF1-202ENST00000594243 BRSK2Q8IWQ3 736 aa16.3■□□□□ 0.2
UPF1-202ENST00000594243 GSDMAQ96QA5 445 aa16.3■□□□□ 0.2
UPF1-202ENST00000594243 COL25A1Q9BXS0 654 aaPredicted RBP16.3■□□□□ 0.2
UPF1-202ENST00000594243 RXFP1Q9HBX9 757 aa16.3■□□□□ 0.2
UPF1-202ENST00000594243 TSHZ2Q9NRE2 1034 aa16.3■□□□□ 0.2
UPF1-202ENST00000594243 TUBGCP4Q9UGJ1 667 aa16.3■□□□□ 0.2
UPF1-202ENST00000594243 PRRC2BQ5JSZ5 2229 aaKnown RBP16.3■□□□□ 0.2
UPF1-202ENST00000594243 TULP1O00294 542 aaPredicted RBP16.29■□□□□ 0.2
UPF1-202ENST00000594243 PDXKO00764 312 aa16.29■□□□□ 0.2
UPF1-202ENST00000594243 CLIC2O15247 247 aa16.29■□□□□ 0.2
UPF1-202ENST00000594243 PRPF40AO75400 957 aaKnown RBP16.29■□□□□ 0.2
UPF1-202ENST00000594243 CNPP09543 421 aaKnown RBP16.29■□□□□ 0.2
UPF1-202ENST00000594243 PAX3P23760 479 aa16.29■□□□□ 0.2
UPF1-202ENST00000594243 KCNC3Q14003 757 aa16.29■□□□□ 0.2
UPF1-202ENST00000594243 TJAP1Q5JTD0 557 aa16.29■□□□□ 0.2
UPF1-202ENST00000594243 CD300LGQ6UXG3 332 aa16.29■□□□□ 0.2
UPF1-202ENST00000594243 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.29■□□□□ 0.2
UPF1-202ENST00000594243 CLEC17AQ6ZS10 378 aa16.29■□□□□ 0.2
UPF1-202ENST00000594243 C12orf56Q8IXR9 622 aa16.29■□□□□ 0.2
UPF1-202ENST00000594243 XXYLT1Q8NBI6 393 aa16.29■□□□□ 0.2
UPF1-202ENST00000594243 C3orf58Q8NDZ4 430 aa16.29■□□□□ 0.2
UPF1-202ENST00000594243 CACTINQ8WUQ7 758 aaKnown RBP16.29■□□□□ 0.2
UPF1-202ENST00000594243 RIN2Q8WYP3 895 aaPredicted RBP16.29■□□□□ 0.2
UPF1-202ENST00000594243 CASP10Q92851 521 aa16.29■□□□□ 0.2
UPF1-202ENST00000594243 GTPBP4Q9BZE4 634 aaKnown RBP16.29■□□□□ 0.2
UPF1-202ENST00000594243 FNIP2Q9P278 1114 aa16.29■□□□□ 0.2
UPF1-202ENST00000594243 HCFC2Q9Y5Z7 792 aa16.29■□□□□ 0.2
UPF1-202ENST00000594243 ATG2AQ2TAZ0 1938 aa16.29■□□□□ 0.2
UPF1-202ENST00000594243 TRANK1O15050 2925 aa16.28■□□□□ 0.2
UPF1-202ENST00000594243 H3BQ06 376 aaPredicted RBP16.28■□□□□ 0.2
UPF1-202ENST00000594243 GLP2RO95838 553 aa16.28■□□□□ 0.2
UPF1-202ENST00000594243 C1RP00736 705 aa16.28■□□□□ 0.2
UPF1-202ENST00000594243 ADH1AP07327 375 aa16.28■□□□□ 0.2
UPF1-202ENST00000594243 NFICP08651 508 aa16.28■□□□□ 0.2
UPF1-202ENST00000594243 FGFR3P22607 806 aa16.28■□□□□ 0.2
UPF1-202ENST00000594243 BRCC3P46736 316 aa16.28■□□□□ 0.2
UPF1-202ENST00000594243 DLX2Q07687 328 aaPredicted RBP16.28■□□□□ 0.2
UPF1-202ENST00000594243 LLGL2Q6P1M3 1020 aa16.28■□□□□ 0.2
UPF1-202ENST00000594243 ZSWIM2Q8NEG5 633 aa16.28■□□□□ 0.2
UPF1-202ENST00000594243 TMEM174Q8WUU8 243 aa16.28■□□□□ 0.2
UPF1-202ENST00000594243 PIK3R5Q8WYR1 880 aa16.28■□□□□ 0.2
UPF1-202ENST00000594243 SMARCE1Q969G3 411 aa16.28■□□□□ 0.2
UPF1-202ENST00000594243 B3GALT6Q96L58 329 aa16.28■□□□□ 0.2
UPF1-202ENST00000594243 FBXL18Q96ME1 805 aa16.28■□□□□ 0.2
UPF1-202ENST00000594243 DPP3Q9NY33 737 aa16.28■□□□□ 0.2
UPF1-202ENST00000594243 CLEC1BQ9P126 229 aa16.28■□□□□ 0.2
UPF1-202ENST00000594243 DPP7Q9UHL4 492 aa16.28■□□□□ 0.2
UPF1-202ENST00000594243 FAM50BQ9Y247 325 aa16.28■□□□□ 0.2
UPF1-202ENST00000594243 PCDHA5Q9Y5H7 936 aa16.28■□□□□ 0.2
UPF1-202ENST00000594243 CITO14578 2027 aa16.28■□□□□ 0.2
UPF1-202ENST00000594243 SYN3O14994 580 aa16.27■□□□□ 0.2
UPF1-202ENST00000594243 TEX28O15482 410 aa16.27■□□□□ 0.2
UPF1-202ENST00000594243 CALUO43852 315 aaPredicted RBP16.27■□□□□ 0.2
UPF1-202ENST00000594243 TBX10O75333 385 aa16.27■□□□□ 0.2
UPF1-202ENST00000594243 HOXB8P17481 243 aaPredicted RBP16.27■□□□□ 0.2
UPF1-202ENST00000594243 IGFBP6P24592 240 aaPredicted RBP16.27■□□□□ 0.2
UPF1-202ENST00000594243 MCM4P33991 863 aa16.27■□□□□ 0.2
UPF1-202ENST00000594243 CYP2J2P51589 502 aa16.27■□□□□ 0.2
UPF1-202ENST00000594243 SNRNP35Q16560 246 aaKnown RBP16.27■□□□□ 0.2
UPF1-202ENST00000594243 RTP2Q5QGT7 225 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms