RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 USP20Q9Y2K6 914 aa9.99□□□□□ -0.81
SS18-220ENST00000582092 MRFAP1Q9Y605 127 aa9.99□□□□□ -0.81
SS18-220ENST00000582092 SAR1BQ9Y6B6 198 aa9.99□□□□□ -0.81
SS18-220ENST00000582092 NRCAMQ92823 1304 aa9.99□□□□□ -0.81
SS18-220ENST00000582092 A0A087WZ62 844 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 A0A0U1RQJ8 604 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 EFCAB8A8MWE9 144 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 ZBTB42B2RXF5 422 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 CTIFO43310 598 aaKnown RBP9.98□□□□□ -0.81
SS18-220ENST00000582092 BUB1O43683 1085 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 HLA-DRAP01903 254 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 VTNP04004 478 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 TBXAS1P24557 533 aaPredicted RBP9.98□□□□□ -0.81
SS18-220ENST00000582092 PAFAH1B1P43034 410 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 IRX5P78411 483 aaPredicted RBP9.98□□□□□ -0.81
SS18-220ENST00000582092 TFAMQ00059 246 aaKnown RBP9.98□□□□□ -0.81
SS18-220ENST00000582092 MCL1Q07820 350 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 MFSD10Q14728 455 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 TSHZ1Q6ZSZ6 1077 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 WDR49Q8IV35 697 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 ARHGEF19Q8IW93 802 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 RPUSD2Q8IZ73 545 aaKnown RBP9.98□□□□□ -0.81
SS18-220ENST00000582092 ZNF710Q8N1W2 664 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 C7orf31Q8N865 590 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 LMO3Q8TAP4 145 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 TAS1R2Q8TE23 839 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 ATRIPQ8WXE1 791 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 CALR3Q96L12 384 aaKnown RBP9.98□□□□□ -0.81
SS18-220ENST00000582092 PPP1R16BQ96T49 567 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 FDXACB1Q9BRP7 624 aaPredicted RBP9.98□□□□□ -0.81
SS18-220ENST00000582092 NFKBIZQ9BYH8 718 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 CCDC113Q9H0I3 377 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 FAM49AQ9H0Q0 323 aaPredicted RBP9.98□□□□□ -0.81
SS18-220ENST00000582092 HIPK3Q9H422 1215 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 TOPORSQ9NS56 1045 aaPredicted RBP9.98□□□□□ -0.81
SS18-220ENST00000582092 SETD4Q9NVD3 440 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 NAGPAQ9UK23 515 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 TBX21Q9UL17 535 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 TNFSF13BQ9Y275 285 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 COQ4Q9Y3A0 265 aa9.98□□□□□ -0.81
SS18-220ENST00000582092 TMCO5BA8MYB1 307 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 M0QZ92 97 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 ZNF263O14978 683 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 ABL1P00519 1130 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 CD4P01730 458 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 CLTAP09496 248 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 SMIM10L2AP0DMW4 78 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 SMIM10L2BP0DMW5 78 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 MCF2P10911 925 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 CYP2C9P11712 490 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 TCP1P17987 556 aaKnown RBP9.97□□□□□ -0.81
SS18-220ENST00000582092 PSEN2P49810 448 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 MCCD1P59942 119 aaPredicted RBP9.97□□□□□ -0.81
SS18-220ENST00000582092 OSTNP61366 133 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 GCNT1Q02742 428 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 MKRN4PQ13434 485 aaPredicted RBP9.97□□□□□ -0.81
SS18-220ENST00000582092 BFSP2Q13515 415 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 SGSM1Q2NKQ1 1148 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 NBPF20Q3BBV1 942 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 C1orf220Q5T0J3 134 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 TEX35Q5T0J7 233 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 LMBRD2Q68DH5 695 aaPredicted RBP9.97□□□□□ -0.81
SS18-220ENST00000582092 DPY19L2P1Q6NXN4 242 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 PSRC1Q6PGN9 363 aaPredicted RBP9.97□□□□□ -0.81
SS18-220ENST00000582092 GLYCTKQ8IVS8 523 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 BRSK2Q8IWQ3 736 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 PLEKHO2Q8TD55 490 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 SEMA4DQ92854 862 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 RPGRIP1Q96KN7 1286 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 RNPC3Q96LT9 517 aaKnown RBP9.97□□□□□ -0.81
SS18-220ENST00000582092 SELENOOQ9BVL4 669 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 PPP1R12CQ9BZL4 782 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 FZD8Q9H461 694 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 PCDH10Q9P2E7 1040 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 PUF60Q9UHX1 559 aaKnown RBP9.97□□□□□ -0.81
SS18-220ENST00000582092 TFR2Q9UP52 801 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 GINS2Q9Y248 185 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 HYOU1Q9Y4L1 999 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 PCDHB4Q9Y5E5 795 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 DUSP10Q9Y6W6 482 aa9.97□□□□□ -0.81
SS18-220ENST00000582092 SMIM35A0A1B0GVV1 85 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 C17orf102A2RUQ5 167 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 RCCD1A6NED2 376 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 BTNL10A8MVZ5 291 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 ENC1O14682 589 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 CYP26A1O43174 497 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 B4GALT4O60513 344 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 RTN2O75298 545 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 C4BPAP04003 597 aaKnown RBP9.96□□□□□ -0.82
SS18-220ENST00000582092 PFKMP08237 780 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 KRT19P08727 400 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 PNMA6AP0CW24 399 aaPredicted RBP9.96□□□□□ -0.82
SS18-220ENST00000582092 P4HA1P13674 534 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 YARSP54577 528 aaKnown RBP9.96□□□□□ -0.82
SS18-220ENST00000582092 CLDN10P78369 228 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 MBTD1Q05BQ5 628 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 NCOA4Q13772 614 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 PCBP1Q15365 356 aaKnown RBP eCLIP9.96□□□□□ -0.82
SS18-220ENST00000582092 SHHQ15465 462 aa9.96□□□□□ -0.82
SS18-220ENST00000582092 FAM187BQ17R55 369 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms