RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 GOLGA8JA6NMD2 632 aa21.18■□□□□ 0.98
SS18-209ENST00000578595 TEX28O15482 410 aa21.18■□□□□ 0.98
SS18-209ENST00000578595 RPL17P18621 184 aaKnown RBP21.18■□□□□ 0.98
SS18-209ENST00000578595 SSTR3P32745 418 aaPredicted RBP21.18■□□□□ 0.98
SS18-209ENST00000578595 MCM4P33991 863 aa21.18■□□□□ 0.98
SS18-209ENST00000578595 PSMD5Q16401 504 aa21.18■□□□□ 0.98
SS18-209ENST00000578595 RTP2Q5QGT7 225 aa21.18■□□□□ 0.98
SS18-209ENST00000578595 JADE1Q6IE81 842 aa21.18■□□□□ 0.98
SS18-209ENST00000578595 CNNM4Q6P4Q7 775 aa21.18■□□□□ 0.98
SS18-209ENST00000578595 RNF168Q8IYW5 571 aaPredicted RBP21.18■□□□□ 0.98
SS18-209ENST00000578595 C3orf58Q8NDZ4 430 aa21.18■□□□□ 0.98
SS18-209ENST00000578595 CCDC47Q96A33 483 aaKnown RBP21.18■□□□□ 0.98
SS18-209ENST00000578595 CCDC34Q96HJ3 373 aa21.18■□□□□ 0.98
SS18-209ENST00000578595 MSLNLQ96KJ4 702 aa21.18■□□□□ 0.98
SS18-209ENST00000578595 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.18■□□□□ 0.98
SS18-209ENST00000578595 PVALEFA0A1B0GWK0 134 aa21.17■□□□□ 0.98
SS18-209ENST00000578595 TMEM189-UBE2V1I3L0A0 370 aa21.17■□□□□ 0.98
SS18-209ENST00000578595 EIF3DO15371 548 aaKnown RBP eCLIP21.17■□□□□ 0.98
SS18-209ENST00000578595 FAM189A1O60320 539 aa21.17■□□□□ 0.98
SS18-209ENST00000578595 RPL9P32969 192 aaKnown RBP21.17■□□□□ 0.98
SS18-209ENST00000578595 GUCY2FP51841 1108 aa21.17■□□□□ 0.98
SS18-209ENST00000578595 CREMQ03060 361 aa21.17■□□□□ 0.98
SS18-209ENST00000578595 TMEM132DQ14C87 1099 aa21.17■□□□□ 0.98
SS18-209ENST00000578595 RARS2Q5T160 578 aaKnown RBP21.17■□□□□ 0.98
SS18-209ENST00000578595 KIAA0319Q5VV43 1072 aa21.17■□□□□ 0.98
SS18-209ENST00000578595 CD302Q8IX05 232 aa21.17■□□□□ 0.98
SS18-209ENST00000578595 TMEM130Q8N3G9 435 aa21.17■□□□□ 0.98
SS18-209ENST00000578595 SMRP1Q8NCR6 262 aa21.17■□□□□ 0.98
SS18-209ENST00000578595 BEST2Q8NFU1 509 aa21.17■□□□□ 0.98
SS18-209ENST00000578595 CBWD1Q9BRT8 395 aa21.17■□□□□ 0.98
SS18-209ENST00000578595 CHST7Q9NS84 486 aa21.17■□□□□ 0.98
SS18-209ENST00000578595 DZANK1Q9NVP4 752 aa21.17■□□□□ 0.98
SS18-209ENST00000578595 CIZ1Q9ULV3 898 aaPredicted RBP21.17■□□□□ 0.98
SS18-209ENST00000578595 USP15Q9Y4E8 981 aaPredicted RBP21.17■□□□□ 0.98
SS18-209ENST00000578595 STYXL1Q9Y6J8 313 aa21.17■□□□□ 0.98
SS18-209ENST00000578595 BDP1A6H8Y1 2624 aa21.17■□□□□ 0.98
SS18-209ENST00000578595 UBE4BO95155 1302 aa21.16■□□□□ 0.98
SS18-209ENST00000578595 LDHAP00338 332 aaKnown RBP21.16■□□□□ 0.98
SS18-209ENST00000578595 GLUD1P00367 558 aa21.16■□□□□ 0.98
SS18-209ENST00000578595 NFICP08651 508 aa21.16■□□□□ 0.98
SS18-209ENST00000578595 PRR29P0C7W0 189 aa21.16■□□□□ 0.98
SS18-209ENST00000578595 GARTP22102 1010 aa21.16■□□□□ 0.98
SS18-209ENST00000578595 ADSSP30520 456 aa21.16■□□□□ 0.98
SS18-209ENST00000578595 CES5AQ6NT32 575 aa21.16■□□□□ 0.98
SS18-209ENST00000578595 ELMSAN1Q6PJG2 1045 aa21.16■□□□□ 0.98
SS18-209ENST00000578595 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.16■□□□□ 0.98
SS18-209ENST00000578595 KRBA2Q6ZNG9 492 aa21.16■□□□□ 0.98
SS18-209ENST00000578595 PALB2Q86YC2 1186 aa21.16■□□□□ 0.98
SS18-209ENST00000578595 FBXL18Q96ME1 805 aa21.16■□□□□ 0.98
SS18-209ENST00000578595 XIRP2A4UGR9 3374 aa21.15■□□□□ 0.98
SS18-209ENST00000578595 ZNF202O95125 648 aa21.15■□□□□ 0.98
SS18-209ENST00000578595 HOXB8P17481 243 aaPredicted RBP21.15■□□□□ 0.98
SS18-209ENST00000578595 IGFBP6P24592 240 aaPredicted RBP21.15■□□□□ 0.98
SS18-209ENST00000578595 TKTP29401 623 aaKnown RBP21.15■□□□□ 0.98
SS18-209ENST00000578595 CLCN4P51793 760 aa21.15■□□□□ 0.98
SS18-209ENST00000578595 KMT5BQ4FZB7 885 aa21.15■□□□□ 0.98
SS18-209ENST00000578595 PDXDC1Q6P996 788 aa21.15■□□□□ 0.98
SS18-209ENST00000578595 TMEM184AQ6ZMB5 413 aa21.15■□□□□ 0.98
SS18-209ENST00000578595 C12orf76Q8N812 135 aaPredicted RBP21.15■□□□□ 0.98
SS18-209ENST00000578595 MAN1C1Q9NR34 630 aa21.15■□□□□ 0.98
SS18-209ENST00000578595 RBAKQ9NYW8 714 aaPredicted RBP21.15■□□□□ 0.98
SS18-209ENST00000578595 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.15■□□□□ 0.98
SS18-209ENST00000578595 FAM237AA0A1B0GTK4 181 aa21.14■□□□□ 0.97
SS18-209ENST00000578595 LILRB3O75022 631 aa21.14■□□□□ 0.97
SS18-209ENST00000578595 IL18RAPO95256 599 aa21.14■□□□□ 0.97
SS18-209ENST00000578595 EFEMP2O95967 443 aa21.14■□□□□ 0.97
SS18-209ENST00000578595 RPN1P04843 607 aaKnown RBP21.14■□□□□ 0.97
SS18-209ENST00000578595 SPATA31D3P0C874 917 aa21.14■□□□□ 0.97
SS18-209ENST00000578595 KCNC3Q14003 757 aa21.14■□□□□ 0.97
SS18-209ENST00000578595 SMAD2Q15796 467 aaKnown RBP21.14■□□□□ 0.97
SS18-209ENST00000578595 SPATA31D4Q6ZUB0 917 aa21.14■□□□□ 0.97
SS18-209ENST00000578595 HS2ST1Q7LGA3 356 aa21.14■□□□□ 0.97
SS18-209ENST00000578595 GPD1LQ8N335 351 aa21.14■□□□□ 0.97
SS18-209ENST00000578595 SLC22A17Q8WUG5 538 aa21.14■□□□□ 0.97
SS18-209ENST00000578595 PIK3R5Q8WYR1 880 aa21.14■□□□□ 0.97
SS18-209ENST00000578595 ASB7Q9H672 318 aa21.14■□□□□ 0.97
SS18-209ENST00000578595 RXFP1Q9HBX9 757 aa21.14■□□□□ 0.97
SS18-209ENST00000578595 SPTBN5Q9NRC6 3674 aaKnown RBP21.14■□□□□ 0.97
SS18-209ENST00000578595 EXTL3O43909 919 aa21.13■□□□□ 0.97
SS18-209ENST00000578595 MYL1P05976 194 aa21.13■□□□□ 0.97
SS18-209ENST00000578595 CYP3A5P20815 502 aa21.13■□□□□ 0.97
SS18-209ENST00000578595 CYP2J2P51589 502 aa21.13■□□□□ 0.97
SS18-209ENST00000578595 SYCE2Q6PIF2 218 aa21.13■□□□□ 0.97
SS18-209ENST00000578595 TMC5Q6UXY8 1006 aa21.13■□□□□ 0.97
SS18-209ENST00000578595 DSTYKQ6XUX3 929 aa21.13■□□□□ 0.97
SS18-209ENST00000578595 ZSWIM2Q8NEG5 633 aa21.13■□□□□ 0.97
SS18-209ENST00000578595 ZNF507Q8TCN5 953 aa21.13■□□□□ 0.97
SS18-209ENST00000578595 SCFD1Q8WVM8 642 aa21.13■□□□□ 0.97
SS18-209ENST00000578595 TSPAN18Q96SJ8 248 aa21.13■□□□□ 0.97
SS18-209ENST00000578595 SFXN1Q9H9B4 322 aa21.13■□□□□ 0.97
SS18-209ENST00000578595 CHMP5Q9NZZ3 219 aa21.13■□□□□ 0.97
SS18-209ENST00000578595 FNIP2Q9P278 1114 aa21.13■□□□□ 0.97
SS18-209ENST00000578595 DPP7Q9UHL4 492 aa21.13■□□□□ 0.97
SS18-209ENST00000578595 TSC2P49815 1807 aa21.13■□□□□ 0.97
SS18-209ENST00000578595 TNFRSF10AO00220 468 aa21.12■□□□□ 0.97
SS18-209ENST00000578595 CLIC2O15247 247 aa21.12■□□□□ 0.97
SS18-209ENST00000578595 KLRC4O43908 158 aa21.12■□□□□ 0.97
SS18-209ENST00000578595 WEE2P0C1S8 567 aa21.12■□□□□ 0.97
SS18-209ENST00000578595 FGFR3P22607 806 aa21.12■□□□□ 0.97
SS18-209ENST00000578595 SP100P23497 879 aaPredicted RBP21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms