RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 ZNF318Q5VUA4 2279 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 H7BY64 318 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 FFAR2O15552 330 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 CLASP2O75122 1294 aaKnown RBP6.67□□□□□ -1.34
VPS53-219ENST00000576019 SKAP2O75563 359 aaPredicted RBP6.67□□□□□ -1.34
VPS53-219ENST00000576019 FGF18O76093 207 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 FARP2O94887 1054 aaPredicted RBP6.67□□□□□ -1.34
VPS53-219ENST00000576019 CNTFP26441 200 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 IL12RB1P42701 662 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 HSPA7P48741 367 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 TNK2Q07912 1038 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 GALNT1Q10472 559 aaPredicted RBP6.67□□□□□ -1.34
VPS53-219ENST00000576019 SREBF2Q12772 1141 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 IL10RAQ13651 578 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 MPEG1Q2M385 716 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 ALDH1L2Q3SY69 923 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 C1QTNF12Q5T7M4 302 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 ARMC3Q5W041 872 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 ANKRD34AQ69YU3 496 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 RTN4RL1Q86UN2 441 aaPredicted RBP6.67□□□□□ -1.34
VPS53-219ENST00000576019 FBXO11Q86XK2 927 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 OR8H2Q8N162 312 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 FBLIM1Q8WUP2 373 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 ERCC4Q92889 916 aaPredicted RBP6.67□□□□□ -1.34
VPS53-219ENST00000576019 ZBTB10Q96DT7 871 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 ZSCAN31Q96LW9 406 aaPredicted RBP6.67□□□□□ -1.34
VPS53-219ENST00000576019 RMDN3Q96TC7 470 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 FOXP3Q9BZS1 431 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 TTYH1Q9H313 450 aaPredicted RBP6.67□□□□□ -1.34
VPS53-219ENST00000576019 RIC8AQ9NPQ8 531 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 GGA3Q9NZ52 723 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 MARCH2Q9P0N8 246 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 DSEQ9UL01 958 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 CGNL1Q0VF96 1302 aa6.67□□□□□ -1.34
VPS53-219ENST00000576019 NCOR2Q9Y618 2525 aa6.66□□□□□ -1.34
VPS53-219ENST00000576019 F8W8V4 182 aa6.66□□□□□ -1.34
VPS53-219ENST00000576019 APOL1O14791 398 aa6.66□□□□□ -1.34
VPS53-219ENST00000576019 GAS2O43903 313 aaKnown RBP6.66□□□□□ -1.34
VPS53-219ENST00000576019 NPHS1O60500 1241 aa6.66□□□□□ -1.34
VPS53-219ENST00000576019 POLBP06746 335 aa6.66□□□□□ -1.34
VPS53-219ENST00000576019 ZNF865P0CJ78 1059 aaPredicted RBP6.66□□□□□ -1.34
VPS53-219ENST00000576019 BCRP11274 1271 aa6.66□□□□□ -1.34
VPS53-219ENST00000576019 KIR3DL1P43629 444 aa6.66□□□□□ -1.34
VPS53-219ENST00000576019 TRIM25Q14258 630 aaKnown RBP6.66□□□□□ -1.34
VPS53-219ENST00000576019 GPATCH4Q5T3I0 446 aaKnown RBP6.66□□□□□ -1.34
VPS53-219ENST00000576019 FMR1NBQ8N0W7 255 aaPredicted RBP6.66□□□□□ -1.34
VPS53-219ENST00000576019 COX4I2Q96KJ9 171 aa6.66□□□□□ -1.34
VPS53-219ENST00000576019 BARD1Q99728 777 aaKnown RBP6.66□□□□□ -1.34
VPS53-219ENST00000576019 DUSP23Q9BVJ7 150 aa6.66□□□□□ -1.34
VPS53-219ENST00000576019 BRIP1Q9BX63 1249 aa6.66□□□□□ -1.34
VPS53-219ENST00000576019 SORBS1Q9BX66 1292 aaKnown RBP6.66□□□□□ -1.34
VPS53-219ENST00000576019 UNC45AQ9H3U1 944 aa6.66□□□□□ -1.34
VPS53-219ENST00000576019 EPB41L1Q9H4G0 881 aa6.66□□□□□ -1.34
VPS53-219ENST00000576019 ZNF287Q9HBT7 754 aa6.66□□□□□ -1.34
VPS53-219ENST00000576019 GULP1Q9UBP9 304 aa6.66□□□□□ -1.34
VPS53-219ENST00000576019 TCFL5Q9UL49 500 aa6.66□□□□□ -1.34
VPS53-219ENST00000576019 OGDHLQ9ULD0 1010 aa6.66□□□□□ -1.34
VPS53-219ENST00000576019 ZMYND8Q9ULU4 1186 aaPredicted RBP6.66□□□□□ -1.34
VPS53-219ENST00000576019 CEP83Q9Y592 693 aa6.66□□□□□ -1.34
VPS53-219ENST00000576019 PCDH11XQ9BZA7 1347 aa6.66□□□□□ -1.34
VPS53-219ENST00000576019 PCDH11YQ9BZA8 1340 aa6.66□□□□□ -1.34
VPS53-219ENST00000576019 SNED1Q8TER0 1413 aa6.66□□□□□ -1.34
VPS53-219ENST00000576019 TCF20Q9UGU0 1960 aaKnown RBP6.66□□□□□ -1.34
VPS53-219ENST00000576019 MYO15AQ9UKN7 3530 aa6.66□□□□□ -1.34
VPS53-219ENST00000576019 SSU72P8A0A1W2PR75 194 aa6.65□□□□□ -1.34
VPS53-219ENST00000576019 K7ENM7 598 aa6.65□□□□□ -1.34
VPS53-219ENST00000576019 FRS3O43559 492 aa6.65□□□□□ -1.34
VPS53-219ENST00000576019 GFPT2O94808 682 aa6.65□□□□□ -1.34
VPS53-219ENST00000576019 BAIAP3O94812 1187 aa6.65□□□□□ -1.34
VPS53-219ENST00000576019 PARP1P09874 1014 aaKnown RBP6.65□□□□□ -1.34
VPS53-219ENST00000576019 LORP23490 312 aaPredicted RBP6.65□□□□□ -1.34
VPS53-219ENST00000576019 ALDH9A1P49189 494 aa6.65□□□□□ -1.34
VPS53-219ENST00000576019 FNTBP49356 437 aa6.65□□□□□ -1.34
VPS53-219ENST00000576019 PCBP3P57721 371 aaKnown RBP6.65□□□□□ -1.34
VPS53-219ENST00000576019 SLC35G1Q2M3R5 365 aa6.65□□□□□ -1.34
VPS53-219ENST00000576019 RFX8Q6ZV50 586 aa6.65□□□□□ -1.34
VPS53-219ENST00000576019 HEATR4Q86WZ0 1026 aa6.65□□□□□ -1.34
VPS53-219ENST00000576019 PHYKPLQ8IUZ5 450 aa6.65□□□□□ -1.34
VPS53-219ENST00000576019 LURAP1LQ8IV03 231 aa6.65□□□□□ -1.34
VPS53-219ENST00000576019 RBM12BQ8IXT5 1001 aaKnown RBP6.65□□□□□ -1.34
VPS53-219ENST00000576019 RTKN2Q8IZC4 609 aa6.65□□□□□ -1.34
VPS53-219ENST00000576019 ESX1Q8N693 406 aa6.65□□□□□ -1.34
VPS53-219ENST00000576019 GPR161Q8N6U8 529 aaKnown RBP6.65□□□□□ -1.34
VPS53-219ENST00000576019 RNF152Q8N8N0 203 aa6.65□□□□□ -1.34
VPS53-219ENST00000576019 EDARADDQ8WWZ3 215 aa6.65□□□□□ -1.34
VPS53-219ENST00000576019 HDAC2Q92769 488 aaKnown RBP6.65□□□□□ -1.34
VPS53-219ENST00000576019 DPF2Q92785 391 aa6.65□□□□□ -1.34
VPS53-219ENST00000576019 C18orf8Q96DM3 657 aa6.65□□□□□ -1.34
VPS53-219ENST00000576019 DDX11Q96FC9 970 aa6.65□□□□□ -1.34
VPS53-219ENST00000576019 MYL10Q9BUA6 226 aa6.65□□□□□ -1.34
VPS53-219ENST00000576019 RSPH9Q9H1X1 276 aaPredicted RBP6.65□□□□□ -1.34
VPS53-219ENST00000576019 ITIH6Q6UXX5 1313 aa6.65□□□□□ -1.35
VPS53-219ENST00000576019 CDHR2Q9BYE9 1310 aa6.65□□□□□ -1.35
VPS53-219ENST00000576019 ROCK1Q13464 1354 aa6.65□□□□□ -1.35
VPS53-219ENST00000576019 A0A088AWK7 358 aa6.64□□□□□ -1.35
VPS53-219ENST00000576019 A0A0A0MRY4 1105 aa6.64□□□□□ -1.35
VPS53-219ENST00000576019 ST20-MTHFSA0A0A6YYL1 179 aa6.64□□□□□ -1.35
VPS53-219ENST00000576019 PRAMEF25A6NGN4 478 aa6.64□□□□□ -1.35
VPS53-219ENST00000576019 LRRC14BA6NHZ5 514 aa6.64□□□□□ -1.35
VPS53-219ENST00000576019 TISP43B9A030 160 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms