RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 FXR2P51116 673 aaKnown RBP eCLIP10.16□□□□□ -0.78
CCDC40-212ENST00000574799 DOCK1Q14185 1865 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 RNF207Q6ZRF8 634 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 THAP2Q9H0W7 228 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 ZDHHC18Q9NUE0 388 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 DNAJC12Q9UKB3 198 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.16□□□□□ -0.78
CCDC40-212ENST00000574799 SBF1O95248 1867 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 ZBTB5O15062 677 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 ZWINTO95229 277 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 CCNFP41002 786 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 ECE1P42892 770 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 USP46P62068 366 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 PLS1Q14651 629 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 DRAP1Q14919 205 aaPredicted RBP10.16□□□□□ -0.78
CCDC40-212ENST00000574799 MIGA2Q7L4E1 593 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 RASGEF1CQ8N431 466 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 HIPK4Q8NE63 616 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 ZNF333Q96JL9 665 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 ZNF184Q99676 751 aaPredicted RBP10.16□□□□□ -0.78
CCDC40-212ENST00000574799 SYNCQ9H7C4 482 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 KCNMB3Q9NPA1 279 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 NAALADL1Q9UQQ1 740 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 DICER1Q9UPY3 1922 aaKnown RBP10.16□□□□□ -0.78
CCDC40-212ENST00000574799 SPDYE2BA6NHP3 402 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 MIF4GDA9UHW6 222 aaKnown RBP10.16□□□□□ -0.78
CCDC40-212ENST00000574799 PLA2G4BP0C869 781 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 SPDYE6P0CI01 402 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 GNAZP19086 355 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 PON1P27169 355 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 TMEM119Q4V9L6 283 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 NSMFQ6X4W1 530 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 ASRGL1Q7L266 308 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 IRF2BP2Q7Z5L9 587 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 RASSF3Q86WH2 238 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 HES6Q96HZ4 224 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 POP1Q99575 1024 aaKnown RBP10.16□□□□□ -0.78
CCDC40-212ENST00000574799 IQCGQ9H095 443 aaKnown RBP10.16□□□□□ -0.78
CCDC40-212ENST00000574799 TRABDQ9H4I3 376 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 NYAP2Q9P242 653 aa10.16□□□□□ -0.78
CCDC40-212ENST00000574799 FAF1Q9UNN5 650 aaPredicted RBP10.16□□□□□ -0.78
CCDC40-212ENST00000574799 USP17L15C9J2P7 530 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 USP17L13C9JLJ4 530 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 USP17L11C9JVI0 530 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 USP17L18D6R9N7 530 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 USP17L22D6RA61 530 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 USP17L17D6RBQ6 530 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 USP17L19D6RCP7 530 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 USP17L20D6RJB6 530 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 POLD1P28340 1107 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 COILP38432 576 aaPredicted RBP10.15□□□□□ -0.78
CCDC40-212ENST00000574799 CYP2J2P51589 502 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 USP17L24Q0WX57 530 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 CETN1Q12798 172 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 PABPC4Q13310 644 aaKnown RBP eCLIP10.15□□□□□ -0.78
CCDC40-212ENST00000574799 QRICH1Q2TAL8 776 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 MDH1BQ5I0G3 518 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 RFWD3Q6PCD5 774 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 USP17L6PQ6QN14 398 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 ZDHHC24Q6UX98 284 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 GMCL1P1Q8NEA9 526 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 FNBP1Q96RU3 617 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 METTL14Q9HCE5 456 aaKnown RBP10.15□□□□□ -0.78
CCDC40-212ENST00000574799 CHKBQ9Y259 395 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 PCDHA2Q9Y5H9 948 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 RPS6KL1Q9Y6S9 549 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 DOCK5Q9H7D0 1870 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 OTOFQ9HC10 1997 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 PTPRFP10586 1907 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 TMCC1O94876 653 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 CCNB1P14635 433 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 PLCB3Q01970 1234 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 C1orf146Q5VVC0 180 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 DSTYKQ6XUX3 929 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 ALG3Q92685 438 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 KRT35Q92764 455 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 UTP4Q969X6 686 aaKnown RBP10.15□□□□□ -0.78
CCDC40-212ENST00000574799 MPP4Q96JB8 637 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 CLMNQ96JQ2 1002 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 TRIM55Q9BYV6 548 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 BCAS3Q9H6U6 928 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 PI4KBQ9UBF8 816 aa10.15□□□□□ -0.78
CCDC40-212ENST00000574799 PAIP2BQ9ULR5 123 aaKnown RBP10.15□□□□□ -0.78
CCDC40-212ENST00000574799 ATP2A1O14983 1001 aa10.15□□□□□ -0.79
CCDC40-212ENST00000574799 FTLP02792 175 aaPredicted RBP10.15□□□□□ -0.79
CCDC40-212ENST00000574799 DPEP1P16444 411 aa10.15□□□□□ -0.79
CCDC40-212ENST00000574799 TAC1P20366 129 aa10.15□□□□□ -0.79
CCDC40-212ENST00000574799 ABCD1P33897 745 aa10.15□□□□□ -0.79
CCDC40-212ENST00000574799 ADCY7P51828 1080 aa10.15□□□□□ -0.79
CCDC40-212ENST00000574799 CNPY1Q3B7I2 92 aa10.15□□□□□ -0.79
CCDC40-212ENST00000574799 VSTM1Q6UX27 236 aa10.15□□□□□ -0.79
CCDC40-212ENST00000574799 ISLR2Q6UXK2 745 aa10.15□□□□□ -0.79
CCDC40-212ENST00000574799 RHOT2Q8IXI1 618 aa10.15□□□□□ -0.79
CCDC40-212ENST00000574799 PRELID2Q8N945 189 aa10.15□□□□□ -0.79
CCDC40-212ENST00000574799 RAB3IL1Q8TBN0 382 aa10.15□□□□□ -0.79
CCDC40-212ENST00000574799 GLIS2Q9BZE0 524 aaPredicted RBP10.15□□□□□ -0.79
CCDC40-212ENST00000574799 GANQ9H2C0 597 aa10.15□□□□□ -0.79
CCDC40-212ENST00000574799 ZWILCHQ9H900 591 aa10.15□□□□□ -0.79
CCDC40-212ENST00000574799 CLIC5Q9NZA1 410 aa10.15□□□□□ -0.79
CCDC40-212ENST00000574799 SCAF8Q9UPN6 1271 aaKnown RBP10.15□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms