RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 SRGAP1Q7Z6B7 1085 aa12.51□□□□□ -0.41
CDH3-208ENST00000569036 C11orf74Q86VG3 221 aa12.51□□□□□ -0.41
CDH3-208ENST00000569036 SCUBE3Q8IX30 993 aa12.51□□□□□ -0.41
CDH3-208ENST00000569036 HS6ST3Q8IZP7 471 aa12.51□□□□□ -0.41
CDH3-208ENST00000569036 TMEM209Q96SK2 561 aa12.51□□□□□ -0.41
CDH3-208ENST00000569036 MBD1Q9UIS9 605 aaPredicted RBP12.51□□□□□ -0.41
CDH3-208ENST00000569036 COL4A3BPQ9Y5P4 624 aa12.51□□□□□ -0.41
CDH3-208ENST00000569036 MYO9AB2RTY4 2548 aa12.51□□□□□ -0.41
CDH3-208ENST00000569036 NUP210Q8TEM1 1887 aaPredicted RBP12.51□□□□□ -0.41
CDH3-208ENST00000569036 PRRG1O14668 218 aa12.5□□□□□ -0.41
CDH3-208ENST00000569036 RNF40O75150 1001 aa12.5□□□□□ -0.41
CDH3-208ENST00000569036 STBD1O95210 358 aa12.5□□□□□ -0.41
CDH3-208ENST00000569036 FTH1P19P0C7X4 201 aa12.5□□□□□ -0.41
CDH3-208ENST00000569036 AKAP5P24588 427 aa12.5□□□□□ -0.41
CDH3-208ENST00000569036 DHPSP49366 369 aaPredicted RBP12.5□□□□□ -0.41
CDH3-208ENST00000569036 GNAQP50148 359 aa12.5□□□□□ -0.41
CDH3-208ENST00000569036 TNK2Q07912 1038 aa12.5□□□□□ -0.41
CDH3-208ENST00000569036 ELAVL2Q12926 359 aaKnown RBP12.5□□□□□ -0.41
CDH3-208ENST00000569036 AP3B2Q13367 1082 aa12.5□□□□□ -0.41
CDH3-208ENST00000569036 TUSC3Q13454 348 aa12.5□□□□□ -0.41
CDH3-208ENST00000569036 SART3Q15020 963 aaKnown RBP12.5□□□□□ -0.41
CDH3-208ENST00000569036 TEAD2Q15562 447 aa12.5□□□□□ -0.41
CDH3-208ENST00000569036 TMEM196Q5HYL7 178 aa12.5□□□□□ -0.41
CDH3-208ENST00000569036 WWC2Q6AWC2 1192 aa12.5□□□□□ -0.41
CDH3-208ENST00000569036 CWC27Q6UX04 472 aaKnown RBP12.5□□□□□ -0.41
CDH3-208ENST00000569036 PLEKHM2Q8IWE5 1019 aa12.5□□□□□ -0.41
CDH3-208ENST00000569036 HDDC3Q8N4P3 179 aa12.5□□□□□ -0.41
CDH3-208ENST00000569036 PNPLA1Q8N8W4 532 aa12.5□□□□□ -0.41
CDH3-208ENST00000569036 PIP4K2CQ8TBX8 421 aa12.5□□□□□ -0.41
CDH3-208ENST00000569036 CRYGNQ8WXF5 182 aa12.5□□□□□ -0.41
CDH3-208ENST00000569036 CCDC51Q96ER9 411 aa12.5□□□□□ -0.41
CDH3-208ENST00000569036 SLITRK6Q9H5Y7 841 aa12.5□□□□□ -0.41
CDH3-208ENST00000569036 KLK14Q9P0G3 267 aa12.5□□□□□ -0.41
CDH3-208ENST00000569036 ZMYM2Q9UBW7 1377 aa12.5□□□□□ -0.41
CDH3-208ENST00000569036 MYO16Q9Y6X6 1858 aa12.5□□□□□ -0.41
CDH3-208ENST00000569036 MAP3K13O43283 966 aa12.49□□□□□ -0.41
CDH3-208ENST00000569036 TSPAN1O60635 241 aa12.49□□□□□ -0.41
CDH3-208ENST00000569036 ERLIN2O94905 339 aa12.49□□□□□ -0.41
CDH3-208ENST00000569036 CYP3A4P08684 503 aa12.49□□□□□ -0.41
CDH3-208ENST00000569036 SRGAP2CP0DJJ0 459 aa12.49□□□□□ -0.41
CDH3-208ENST00000569036 MYL4P12829 197 aa12.49□□□□□ -0.41
CDH3-208ENST00000569036 FGFR3P22607 806 aa12.49□□□□□ -0.41
CDH3-208ENST00000569036 CLK2P49760 499 aaKnown RBP12.49□□□□□ -0.41
CDH3-208ENST00000569036 ADCY7P51828 1080 aa12.49□□□□□ -0.41
CDH3-208ENST00000569036 ROR1Q01973 937 aa12.49□□□□□ -0.41
CDH3-208ENST00000569036 HNRNPDQ14103 355 aaKnown RBP12.49□□□□□ -0.41
CDH3-208ENST00000569036 ARHGAP29Q52LW3 1261 aa12.49□□□□□ -0.41
CDH3-208ENST00000569036 XKR3Q5GH77 459 aa12.49□□□□□ -0.41
CDH3-208ENST00000569036 NOTUMQ6P988 496 aa12.49□□□□□ -0.41
CDH3-208ENST00000569036 TEX2Q8IWB9 1127 aa12.49□□□□□ -0.41
CDH3-208ENST00000569036 IGDCC4Q8TDY8 1250 aa12.49□□□□□ -0.41
CDH3-208ENST00000569036 RILPL2Q969X0 211 aa12.49□□□□□ -0.41
CDH3-208ENST00000569036 CPB2Q96IY4 423 aa12.49□□□□□ -0.41
CDH3-208ENST00000569036 LRRC3BQ96PB8 259 aa12.49□□□□□ -0.41
CDH3-208ENST00000569036 CSRNP2Q9H175 543 aa12.49□□□□□ -0.41
CDH3-208ENST00000569036 PRORYQ9H606 182 aa12.49□□□□□ -0.41
CDH3-208ENST00000569036 INSL5Q9Y5Q6 135 aa12.49□□□□□ -0.41
CDH3-208ENST00000569036 PCDH15Q96QU1 1955 aa12.49□□□□□ -0.41
CDH3-208ENST00000569036 PTPRDP23468 1912 aa12.49□□□□□ -0.41
CDH3-208ENST00000569036 PYCARD-AS1I3L0S3 204 aa12.48□□□□□ -0.41
CDH3-208ENST00000569036 CHMP2AO43633 222 aa12.48□□□□□ -0.41
CDH3-208ENST00000569036 CD59P13987 128 aa12.48□□□□□ -0.41
CDH3-208ENST00000569036 ELF1P32519 619 aa12.48□□□□□ -0.41
CDH3-208ENST00000569036 DGKEP52429 567 aa12.48□□□□□ -0.41
CDH3-208ENST00000569036 EPHA5P54756 1037 aa12.48□□□□□ -0.41
CDH3-208ENST00000569036 NAPAP54920 295 aa12.48□□□□□ -0.41
CDH3-208ENST00000569036 KCNC4Q03721 635 aa12.48□□□□□ -0.41
CDH3-208ENST00000569036 GRSF1Q12849 480 aaKnown RBP eCLIP12.48□□□□□ -0.41
CDH3-208ENST00000569036 TRIP6Q15654 476 aaKnown RBP12.48□□□□□ -0.41
CDH3-208ENST00000569036 USP39Q53GS9 565 aaKnown RBP12.48□□□□□ -0.41
CDH3-208ENST00000569036 HAUS6Q7Z4H7 955 aa12.48□□□□□ -0.41
CDH3-208ENST00000569036 GPIHBP1Q8IV16 184 aa12.48□□□□□ -0.41
CDH3-208ENST00000569036 HACE1Q8IYU2 909 aa12.48□□□□□ -0.41
CDH3-208ENST00000569036 CCDC82Q8N4S0 544 aa12.48□□□□□ -0.41
CDH3-208ENST00000569036 ZNF461Q8TAF7 563 aa12.48□□□□□ -0.41
CDH3-208ENST00000569036 SHKBP1Q8TBC3 707 aa12.48□□□□□ -0.41
CDH3-208ENST00000569036 CAMK1GQ96NX5 476 aa12.48□□□□□ -0.41
CDH3-208ENST00000569036 TPSD1Q9BZJ3 242 aa12.48□□□□□ -0.41
CDH3-208ENST00000569036 FSCN3Q9NQT6 498 aa12.48□□□□□ -0.41
CDH3-208ENST00000569036 BACE2Q9Y5Z0 518 aa12.48□□□□□ -0.41
CDH3-208ENST00000569036 ARID2Q68CP9 1835 aa12.48□□□□□ -0.41
CDH3-208ENST00000569036 MUC22E2RYF6 1773 aaPredicted RBP12.48□□□□□ -0.41
CDH3-208ENST00000569036 GOLGA4Q13439 2230 aaKnown RBP12.47□□□□□ -0.41
CDH3-208ENST00000569036 CAPN9O14815 690 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 OPHN1O60890 802 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 ABLIM3O94929 683 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 SEC24AO95486 1093 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 EGFP01133 1207 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 RXRAP19793 462 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 AXLP30530 894 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 ANTXR2P58335 489 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 CACNB1Q02641 598 aaPredicted RBP12.47□□□□□ -0.41
CDH3-208ENST00000569036 CFHR1Q03591 330 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 CYP4F3Q08477 520 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 DMC1Q14565 340 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 MAPK6Q16659 721 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 ITPRIPL2Q3MIP1 535 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 PRR16Q569H4 304 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 C20orf194Q5TEA3 1177 aa12.47□□□□□ -0.41
CDH3-208ENST00000569036 IQCEQ6IPM2 695 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms