RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 ZNF292O60281 2723 aa18.77■□□□□ 0.6
CLN3-217ENST00000565354 A0A0B4J269 797 aa18.77■□□□□ 0.6
CLN3-217ENST00000565354 TISP43B9A030 160 aa18.77■□□□□ 0.6
CLN3-217ENST00000565354 RHOBTB3O94955 611 aa18.77■□□□□ 0.6
CLN3-217ENST00000565354 ALDH7A1P49419 539 aaKnown RBP18.77■□□□□ 0.6
CLN3-217ENST00000565354 GRIK3Q13003 919 aa18.77■□□□□ 0.6
CLN3-217ENST00000565354 STK4Q13043 487 aa18.77■□□□□ 0.6
CLN3-217ENST00000565354 KCNB1Q14721 858 aa18.77■□□□□ 0.6
CLN3-217ENST00000565354 SEZ6Q53EL9 994 aa18.77■□□□□ 0.6
CLN3-217ENST00000565354 SLC39A4Q6P5W5 647 aa18.77■□□□□ 0.6
CLN3-217ENST00000565354 KCNT2Q6UVM3 1135 aa18.77■□□□□ 0.6
CLN3-217ENST00000565354 ZNF507Q8TCN5 953 aa18.77■□□□□ 0.6
CLN3-217ENST00000565354 NECTIN4Q96NY8 510 aa18.77■□□□□ 0.6
CLN3-217ENST00000565354 NRDE2Q9H7Z3 1164 aa18.77■□□□□ 0.6
CLN3-217ENST00000565354 RPF1Q9H9Y2 349 aaKnown RBP18.77■□□□□ 0.6
CLN3-217ENST00000565354 CDH22Q9UJ99 828 aa18.77■□□□□ 0.6
CLN3-217ENST00000565354 C2CD4DB7Z1M9 353 aa18.76■□□□□ 0.59
CLN3-217ENST00000565354 THP07101 528 aa18.76■□□□□ 0.59
CLN3-217ENST00000565354 CLTAP09496 248 aa18.76■□□□□ 0.59
CLN3-217ENST00000565354 GARTP22102 1010 aa18.76■□□□□ 0.59
CLN3-217ENST00000565354 PPM1AP35813 382 aa18.76■□□□□ 0.59
CLN3-217ENST00000565354 AFF1P51825 1210 aaKnown RBP18.76■□□□□ 0.59
CLN3-217ENST00000565354 BCAR1P56945 870 aa18.76■□□□□ 0.59
CLN3-217ENST00000565354 ITIH3Q06033 890 aa18.76■□□□□ 0.59
CLN3-217ENST00000565354 CES5AQ6NT32 575 aa18.76■□□□□ 0.59
CLN3-217ENST00000565354 EPM2AIP1Q7L775 607 aaPredicted RBP18.76■□□□□ 0.59
CLN3-217ENST00000565354 HS2ST1Q7LGA3 356 aa18.76■□□□□ 0.59
CLN3-217ENST00000565354 ELOA2Q8IYF1 753 aaPredicted RBP18.76■□□□□ 0.59
CLN3-217ENST00000565354 SCFD1Q8WVM8 642 aa18.76■□□□□ 0.59
CLN3-217ENST00000565354 CASP10Q92851 521 aa18.76■□□□□ 0.59
CLN3-217ENST00000565354 FAM212AQ96EL1 285 aa18.76■□□□□ 0.59
CLN3-217ENST00000565354 HAPLN2Q9GZV7 340 aa18.76■□□□□ 0.59
CLN3-217ENST00000565354 IKZF4Q9H2S9 585 aa18.76■□□□□ 0.59
CLN3-217ENST00000565354 POMKQ9H5K3 350 aa18.76■□□□□ 0.59
CLN3-217ENST00000565354 MIOSQ9NXC5 875 aa18.76■□□□□ 0.59
CLN3-217ENST00000565354 TDRD15B5MCY1 1934 aaKnown RBP18.75■□□□□ 0.59
CLN3-217ENST00000565354 INPPL1O15357 1258 aa18.75■□□□□ 0.59
CLN3-217ENST00000565354 LDHAP00338 332 aaKnown RBP18.75■□□□□ 0.59
CLN3-217ENST00000565354 ALDH2P05091 517 aa18.75■□□□□ 0.59
CLN3-217ENST00000565354 PBX3P40426 434 aa18.75■□□□□ 0.59
CLN3-217ENST00000565354 OR1G1P47890 313 aa18.75■□□□□ 0.59
CLN3-217ENST00000565354 KRT17Q04695 432 aa18.75■□□□□ 0.59
CLN3-217ENST00000565354 PPP2R3AQ06190 1150 aa18.75■□□□□ 0.59
CLN3-217ENST00000565354 GLRA4Q5JXX5 417 aa18.75■□□□□ 0.59
CLN3-217ENST00000565354 ASTLQ6HA08 431 aaPredicted RBP18.75■□□□□ 0.59
CLN3-217ENST00000565354 TMC7Q7Z402 723 aa18.75■□□□□ 0.59
CLN3-217ENST00000565354 ZNF280BQ86YH2 543 aa18.75■□□□□ 0.59
CLN3-217ENST00000565354 KIAA0895Q8NCT3 520 aa18.75■□□□□ 0.59
CLN3-217ENST00000565354 ERCC4Q92889 916 aaPredicted RBP18.75■□□□□ 0.59
CLN3-217ENST00000565354 GSDMAQ96QA5 445 aa18.75■□□□□ 0.59
CLN3-217ENST00000565354 TMEM175Q9BSA9 504 aa18.75■□□□□ 0.59
CLN3-217ENST00000565354 ADAM7Q9H2U9 754 aa18.75■□□□□ 0.59
CLN3-217ENST00000565354 LMBRD1Q9NUN5 540 aa18.75■□□□□ 0.59
CLN3-217ENST00000565354 SPG21Q9NZD8 308 aa18.75■□□□□ 0.59
CLN3-217ENST00000565354 FAN1Q9Y2M0 1017 aa18.75■□□□□ 0.59
CLN3-217ENST00000565354 PCDHA5Q9Y5H7 936 aa18.75■□□□□ 0.59
CLN3-217ENST00000565354 STYXL1Q9Y6J8 313 aa18.75■□□□□ 0.59
CLN3-217ENST00000565354 EP300Q09472 2414 aaPredicted RBP18.74■□□□□ 0.59
CLN3-217ENST00000565354 NT5C1B-RDH14C9J2C7 533 aa18.74■□□□□ 0.59
CLN3-217ENST00000565354 DDHD2O94830 711 aa18.74■□□□□ 0.59
CLN3-217ENST00000565354 CXCL8P10145 99 aa18.74■□□□□ 0.59
CLN3-217ENST00000565354 TNFSF9P41273 254 aa18.74■□□□□ 0.59
CLN3-217ENST00000565354 ACOT2P49753 483 aa18.74■□□□□ 0.59
CLN3-217ENST00000565354 KNOP1Q1ED39 458 aaKnown RBP18.74■□□□□ 0.59
CLN3-217ENST00000565354 BMT2Q1RMZ1 405 aa18.74■□□□□ 0.59
CLN3-217ENST00000565354 ERMP1Q7Z2K6 904 aa18.74■□□□□ 0.59
CLN3-217ENST00000565354 TMEM169Q96HH4 297 aa18.74■□□□□ 0.59
CLN3-217ENST00000565354 FAM213AQ9BRX8 229 aa18.74■□□□□ 0.59
CLN3-217ENST00000565354 GTPBP4Q9BZE4 634 aaKnown RBP18.74■□□□□ 0.59
CLN3-217ENST00000565354 SMOC2Q9H3U7 446 aa18.74■□□□□ 0.59
CLN3-217ENST00000565354 PCIF1Q9H4Z3 704 aa18.74■□□□□ 0.59
CLN3-217ENST00000565354 DNAJB4Q9UDY4 337 aa18.74■□□□□ 0.59
CLN3-217ENST00000565354 HCFC2Q9Y5Z7 792 aa18.74■□□□□ 0.59
CLN3-217ENST00000565354 PTGESO14684 152 aa18.73■□□□□ 0.59
CLN3-217ENST00000565354 KIAA0391O15091 583 aaKnown RBP18.73■□□□□ 0.59
CLN3-217ENST00000565354 GALTP07902 379 aa18.73■□□□□ 0.59
CLN3-217ENST00000565354 MTHFRP42898 656 aa18.73■□□□□ 0.59
CLN3-217ENST00000565354 SLC11A1P49279 550 aa18.73■□□□□ 0.59
CLN3-217ENST00000565354 SNRPFP62306 86 aaKnown RBP18.73■□□□□ 0.59
CLN3-217ENST00000565354 TUSC3Q13454 348 aa18.73■□□□□ 0.59
CLN3-217ENST00000565354 SMC1AQ14683 1233 aaKnown RBP18.73■□□□□ 0.59
CLN3-217ENST00000565354 CAMK4Q16566 473 aa18.73■□□□□ 0.59
CLN3-217ENST00000565354 ZBTB41Q5SVQ8 909 aa18.73■□□□□ 0.59
CLN3-217ENST00000565354 MRPL43Q8N983 215 aaKnown RBP18.73■□□□□ 0.59
CLN3-217ENST00000565354 GSTCDQ8NEC7 633 aa18.73■□□□□ 0.59
CLN3-217ENST00000565354 GOLGA5Q8TBA6 731 aa18.73■□□□□ 0.59
CLN3-217ENST00000565354 NKD2Q969F2 451 aaPredicted RBP18.73■□□□□ 0.59
CLN3-217ENST00000565354 SAAL1Q96ER3 474 aa18.73■□□□□ 0.59
CLN3-217ENST00000565354 CBWD1Q9BRT8 395 aa18.73■□□□□ 0.59
CLN3-217ENST00000565354 PLEKHA5Q9HAU0 1116 aa18.73■□□□□ 0.59
CLN3-217ENST00000565354 SLC38A7Q9NVC3 462 aa18.73■□□□□ 0.59
CLN3-217ENST00000565354 CGNQ9P2M7 1197 aaKnown RBP18.73■□□□□ 0.59
CLN3-217ENST00000565354 CPSF3Q9UKF6 684 aaKnown RBP18.73■□□□□ 0.59
CLN3-217ENST00000565354 PRG3Q9Y2Y8 225 aaPredicted RBP18.73■□□□□ 0.59
CLN3-217ENST00000565354 SMIM28A0A1B0GU29 152 aa18.72■□□□□ 0.59
CLN3-217ENST00000565354 C2orf71A6NGG8 1288 aa18.72■□□□□ 0.59
CLN3-217ENST00000565354 CLIC2O15247 247 aa18.72■□□□□ 0.59
CLN3-217ENST00000565354 ASGR2P07307 311 aa18.72■□□□□ 0.59
CLN3-217ENST00000565354 ADSSP30520 456 aa18.72■□□□□ 0.59
CLN3-217ENST00000565354 HOXD13P35453 343 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms