RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 AMPD3Q01432 767 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 MECOMQ03112 1051 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 DHCR24Q15392 516 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 TERF2Q15554 542 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 PTPN14Q15678 1187 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 CCDC178Q5BJE1 867 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 LMBRD2Q68DH5 695 aaPredicted RBP5.75□□□□□ -1.49
VPS35-205ENST00000563984 SNX32Q86XE0 403 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 LRRC49Q8IUZ0 686 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 D2HGDHQ8N465 521 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 HDAC7Q8WUI4 952 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 USP6NLQ92738 828 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 TSR2Q969E8 191 aaKnown RBP5.75□□□□□ -1.49
VPS35-205ENST00000563984 TBC1D20Q96BZ9 403 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 ZBTB9Q96C00 473 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 RPL10LQ96L21 214 aaKnown RBP5.75□□□□□ -1.49
VPS35-205ENST00000563984 BAG1Q99933 345 aaPredicted RBP5.75□□□□□ -1.49
VPS35-205ENST00000563984 TRIM7Q9C029 511 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 RIC8AQ9NPQ8 531 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 CFAP45Q9UL16 551 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 BLOC1S6Q9UL45 172 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 BARX2Q9UMQ3 279 aaPredicted RBP5.75□□□□□ -1.49
VPS35-205ENST00000563984 RRP15Q9Y3B9 282 aaKnown RBP5.75□□□□□ -1.49
VPS35-205ENST00000563984 N6AMT1Q9Y5N5 214 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 PPP2R3BQ9Y5P8 575 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 KAT6BQ8WYB5 2073 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 A0A0A6YYK5 440 aaPredicted RBP5.74□□□□□ -1.49
VPS35-205ENST00000563984 C19orf81C9J6K1 198 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 F8VZ95 297 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 VSIG10L2P0DP72 767 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 HNRNPLP14866 589 aaKnown RBP eCLIP5.74□□□□□ -1.49
VPS35-205ENST00000563984 STAT3P40763 770 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 PRPHP41219 470 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 KIR2DL3P43628 341 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 ADAM8P78325 824 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 EIF4A2Q14240 407 aaKnown RBP5.74□□□□□ -1.49
VPS35-205ENST00000563984 SMC1AQ14683 1233 aaKnown RBP5.74□□□□□ -1.49
VPS35-205ENST00000563984 PPP2R5BQ15173 497 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 GRAMD1BQ3KR37 738 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 NRN1LQ496H8 165 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 TSHZ3Q63HK5 1081 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 FAAH2Q6GMR7 532 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 FRMD7Q6ZUT3 714 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 SGMS1Q86VZ5 419 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 CCDC65Q8IXS2 484 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 EFCAB13Q8IY85 973 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 ZNF808Q8N4W9 903 aaPredicted RBP5.74□□□□□ -1.49
VPS35-205ENST00000563984 CDYL2Q8N8U2 506 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 PPP1R14CQ8TAE6 165 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 WDR66Q8TBY9 1149 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 FERMT2Q96AC1 680 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 GPHA2Q96T91 129 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 SOX7Q9BT81 388 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 ABCG4Q9H172 646 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 WNT8AQ9H1J5 351 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 C14orf93Q9H972 538 aaKnown RBP5.74□□□□□ -1.49
VPS35-205ENST00000563984 ARNT2Q9HBZ2 717 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 EMC7Q9NPA0 242 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 AURKAIP1Q9NWT8 199 aaPredicted RBP5.74□□□□□ -1.49
VPS35-205ENST00000563984 SEPT10Q9P0V9 454 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 ATP8A1Q9Y2Q0 1164 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 PCDHB6Q9Y5E3 794 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 TNFRSF18Q9Y5U5 241 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 MYO15BQ96JP2 1530 aa5.74□□□□□ -1.49
VPS35-205ENST00000563984 PRSS47A8MTI9 375 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 SMTNL1A8MU46 457 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 PRRT4C9JH25 899 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 FOXN3O00409 490 aaPredicted RBP5.73□□□□□ -1.49
VPS35-205ENST00000563984 CYP27B1O15528 508 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 SGTAO43765 313 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 ZEB2O60315 1214 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 TOX4O94842 621 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 PCDH8O95206 1070 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 BAG4O95429 457 aaKnown RBP5.73□□□□□ -1.49
VPS35-205ENST00000563984 PFKMP08237 780 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 HIBADHP31937 336 aaKnown RBP5.73□□□□□ -1.49
VPS35-205ENST00000563984 GPR15P49685 360 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 RWDD2BP57060 319 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 GABPB1Q06547 395 aaPredicted RBP5.73□□□□□ -1.49
VPS35-205ENST00000563984 ZBTB17Q13105 803 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 SMN1Q16637 294 aaKnown RBP5.73□□□□□ -1.49
VPS35-205ENST00000563984 KRT40Q6A162 431 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 RNF207Q6ZRF8 634 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 CCDC80Q76M96 950 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 THNSL2Q86YJ6 484 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 ANKRD18AQ8IVF6 992 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 THEMISQ8N1K5 641 aaPredicted RBP5.73□□□□□ -1.49
VPS35-205ENST00000563984 ANKRD35Q8N283 1001 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 TEX9Q8N6V9 391 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 PPHLN1Q8NEY8 458 aaKnown RBP5.73□□□□□ -1.49
VPS35-205ENST00000563984 RSAD2Q8WXG1 361 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 MAML1Q92585 1016 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 USP7Q93009 1102 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 TMEM176AQ96HP8 235 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 SLC39A3Q9BRY0 314 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 FAM167BQ9BTA0 163 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.73□□□□□ -1.49
VPS35-205ENST00000563984 ZNF700Q9H0M5 742 aa5.73□□□□□ -1.49
VPS35-205ENST00000563984 PRKRIP1Q9H875 184 aaPredicted RBP5.73□□□□□ -1.49
VPS35-205ENST00000563984 IL23AQ9NPF7 189 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms