RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 CYP2C19P33261 490 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 ACVRL1P37023 503 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 CHN2P52757 468 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 SETQ01105 290 aaPredicted RBP4.32□□□□□ -1.72
VPS35-203ENST00000562420 ABHD18Q0P651 414 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 IL10RAQ13651 578 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 BEAN1Q3B7T3 259 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 ATAT1Q5SQI0 421 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 FNDC7Q5VTL7 733 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 CXorf57Q6NSI4 855 aaKnown RBP4.32□□□□□ -1.72
VPS35-203ENST00000562420 ZNF529Q6P280 563 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 ZFPM1Q8IX07 1006 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 SYNE4Q8N205 404 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 FBXO18Q8NFZ0 1043 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 CPT1CQ8TCG5 803 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 NUP133Q8WUM0 1156 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 HAS1Q92839 578 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 FAM193BQ96PV7 902 aaPredicted RBP4.32□□□□□ -1.72
VPS35-203ENST00000562420 NEU1Q99519 415 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 KLHL11Q9NVR0 708 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 RLIMQ9NVW2 624 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 GPRC5BQ9NZH0 403 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 JKAMPQ9P055 326 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 PCDHA13Q9Y5I0 950 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 FPGT-TNNI3KV9GXZ4 949 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 SLC43A1O75387 559 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 CFIP05156 583 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 PF4V1P10720 104 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 LAG3P18627 525 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 NR4A1P22736 598 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 HK3P52790 923 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 RAP2BP61225 183 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 BLOC1S1P78537 153 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 MXRA7P84157 204 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 GTF2H3Q13889 308 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 NFE2Q16621 373 aaPredicted RBP4.31□□□□□ -1.72
VPS35-203ENST00000562420 GADL1Q6ZQY3 521 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 PDSS2Q86YH6 399 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 FITM2Q8N6M3 262 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 C3orf20Q8ND61 904 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 STON2Q8WXE9 905 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 KAT5Q92993 513 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 HPS3Q969F9 1004 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 CLPTM1LQ96KA5 538 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 MED15Q96RN5 788 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 RTFDC1Q9BY42 306 aaPredicted RBP4.31□□□□□ -1.72
VPS35-203ENST00000562420 ZNF341Q9BYN7 854 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 GTPBP4Q9BZE4 634 aaKnown RBP4.31□□□□□ -1.72
VPS35-203ENST00000562420 SLC12A5Q9H2X9 1139 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 RNPEPQ9H4A4 650 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 WDCPQ9H6R7 721 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 KMT5AQ9NQR1 393 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 TMEM74BQ9NUR3 256 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 GNL3LQ9NVN8 582 aaKnown RBP4.31□□□□□ -1.72
VPS35-203ENST00000562420 FBXO34Q9NWN3 711 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 TRPM5Q9NZQ8 1165 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 IP6K2Q9UHH9 426 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 ZNF180Q9UJW8 692 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 ATP11BQ9Y2G3 1177 aa4.31□□□□□ -1.72
VPS35-203ENST00000562420 THRAP3Q9Y2W1 955 aaKnown RBP4.31□□□□□ -1.72
VPS35-203ENST00000562420 NT5C1B-RDH14C9J2C7 533 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 NPIPB8E9PQR5 432 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 OVOL3O00110 214 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 GRM6O15303 877 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 FAM20BO75063 409 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 OFD1O75665 1012 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 RPS6KA4O75676 772 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 CD1AP06126 327 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 CT47B1P0C2W7 299 aaPredicted RBP4.3□□□□□ -1.72
VPS35-203ENST00000562420 MALP21145 153 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 ZFP36P26651 326 aaKnown RBP4.3□□□□□ -1.72
VPS35-203ENST00000562420 ANP32AP39687 249 aaKnown RBP4.3□□□□□ -1.72
VPS35-203ENST00000562420 GDF5P43026 501 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 RAB27AP51159 221 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 RNASE9P60153 205 aaKnown RBP4.3□□□□□ -1.72
VPS35-203ENST00000562420 DGCR2P98153 550 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 PURAQ00577 322 aaKnown RBP4.3□□□□□ -1.72
VPS35-203ENST00000562420 PGS1Q32NB8 556 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 PDCD4Q53EL6 469 aaKnown RBP4.3□□□□□ -1.72
VPS35-203ENST00000562420 NXNQ6DKJ4 435 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 ZNF365Q70YC5 407 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 MED25Q71SY5 747 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 MRGPREQ86SM8 312 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 ARHGEF19Q8IW93 802 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 FAM43AQ8N2R8 423 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 OR56A1Q8NGH5 318 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 ANP32BQ92688 251 aaKnown RBP4.3□□□□□ -1.72
VPS35-203ENST00000562420 RGMAQ96B86 450 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 MVB12AQ96EY5 273 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 PRRX2Q99811 253 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 MYOCQ99972 504 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 PACSIN1Q9BY11 444 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 NMRK2Q9NPI5 230 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 AKIP1Q9NQ31 210 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 SRRDQ9UH36 339 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 KCNE5Q9UJ90 142 aa4.3□□□□□ -1.72
VPS35-203ENST00000562420 RUVBL1Q9Y265 456 aaKnown RBP4.3□□□□□ -1.72
VPS35-203ENST00000562420 ZNF185O15231 689 aa4.29□□□□□ -1.72
VPS35-203ENST00000562420 ADH4P08319 380 aa4.29□□□□□ -1.72
VPS35-203ENST00000562420 CKBP12277 381 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms