RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 IL17RBQ9NRM6 502 aa3.8□□□□□ -1.8
VPS13C-205ENST00000558088 ARPP21Q9UBL0 812 aaPredicted RBP3.8□□□□□ -1.8
VPS13C-205ENST00000558088 AJAP1Q9UKB5 411 aaPredicted RBP3.8□□□□□ -1.8
VPS13C-205ENST00000558088 MAPRE3Q9UPY8 281 aa3.8□□□□□ -1.8
VPS13C-205ENST00000558088 SIK3Q9Y2K2 1263 aa3.8□□□□□ -1.8
VPS13C-205ENST00000558088 YY2O15391 372 aa3.79□□□□□ -1.8
VPS13C-205ENST00000558088 PDE8AO60658 829 aa3.79□□□□□ -1.8
VPS13C-205ENST00000558088 BPIP17213 487 aa3.79□□□□□ -1.8
VPS13C-205ENST00000558088 SLC6A2P23975 617 aa3.79□□□□□ -1.8
VPS13C-205ENST00000558088 GUCY1A2P33402 732 aa3.79□□□□□ -1.8
VPS13C-205ENST00000558088 NOMO1Q15155 1222 aa3.79□□□□□ -1.8
VPS13C-205ENST00000558088 GEN1Q17RS7 908 aa3.79□□□□□ -1.8
VPS13C-205ENST00000558088 MUM1Q2TAK8 710 aa3.79□□□□□ -1.8
VPS13C-205ENST00000558088 ANO4Q32M45 955 aa3.79□□□□□ -1.8
VPS13C-205ENST00000558088 NBPF8Q3BBV2 869 aa3.79□□□□□ -1.8
VPS13C-205ENST00000558088 DALRD3Q5D0E6 543 aaKnown RBP3.79□□□□□ -1.8
VPS13C-205ENST00000558088 KAZNQ674X7 775 aa3.79□□□□□ -1.8
VPS13C-205ENST00000558088 ZNF788Q6ZQV5 615 aa3.79□□□□□ -1.8
VPS13C-205ENST00000558088 SEM1Q6ZVN7 128 aa3.79□□□□□ -1.8
VPS13C-205ENST00000558088 UBE3BQ7Z3V4 1068 aa3.79□□□□□ -1.8
VPS13C-205ENST00000558088 CLRN3Q8NCR9 226 aa3.79□□□□□ -1.8
VPS13C-205ENST00000558088 TSPEARQ8WU66 669 aa3.79□□□□□ -1.8
VPS13C-205ENST00000558088 ANKS1AQ92625 1134 aa3.79□□□□□ -1.8
VPS13C-205ENST00000558088 NACC2Q96BF6 587 aa3.79□□□□□ -1.8
VPS13C-205ENST00000558088 SARAFQ96BY9 339 aa3.79□□□□□ -1.8
VPS13C-205ENST00000558088 MARS2Q96GW9 593 aaKnown RBP3.79□□□□□ -1.8
VPS13C-205ENST00000558088 FBXL20Q96IG2 436 aa3.79□□□□□ -1.8
VPS13C-205ENST00000558088 QRSL1Q9H0R6 528 aaKnown RBP3.79□□□□□ -1.8
VPS13C-205ENST00000558088 LDAHQ9H6V9 325 aa3.79□□□□□ -1.8
VPS13C-205ENST00000558088 APOBEC2Q9Y235 224 aaKnown RBP3.79□□□□□ -1.8
VPS13C-205ENST00000558088 ENTPD2Q9Y5L3 495 aa3.79□□□□□ -1.8
VPS13C-205ENST00000558088 POLR2AP24928 1970 aaKnown RBP3.78□□□□□ -1.8
VPS13C-205ENST00000558088 GOLGA8AA7E2F4 631 aa3.78□□□□□ -1.8
VPS13C-205ENST00000558088 FAM171A2A8MVW0 826 aa3.78□□□□□ -1.8
VPS13C-205ENST00000558088 IKBKBO14920 756 aa3.78□□□□□ -1.8
VPS13C-205ENST00000558088 GPR32O75388 356 aa3.78□□□□□ -1.8
VPS13C-205ENST00000558088 ZFPL1O95159 310 aa3.78□□□□□ -1.8
VPS13C-205ENST00000558088 MYCLP1P12525 358 aaPredicted RBP3.78□□□□□ -1.8
VPS13C-205ENST00000558088 SOX10P56693 466 aa3.78□□□□□ -1.8
VPS13C-205ENST00000558088 SF3B3Q15393 1217 aaKnown RBP3.78□□□□□ -1.8
VPS13C-205ENST00000558088 EZH2Q15910 746 aaKnown RBP3.78□□□□□ -1.8
VPS13C-205ENST00000558088 SRSF7Q16629 238 aaKnown RBP eCLIP3.78□□□□□ -1.8
VPS13C-205ENST00000558088 DDX46Q7L014 1031 aaKnown RBP3.78□□□□□ -1.8
VPS13C-205ENST00000558088 SH2D3CQ8N5H7 860 aa3.78□□□□□ -1.8
VPS13C-205ENST00000558088 HASPINQ8TF76 798 aa3.78□□□□□ -1.8
VPS13C-205ENST00000558088 DRC1Q96MC2 740 aa3.78□□□□□ -1.8
VPS13C-205ENST00000558088 TIMP4Q99727 224 aa3.78□□□□□ -1.8
VPS13C-205ENST00000558088 FBXO34Q9NWN3 711 aa3.78□□□□□ -1.8
VPS13C-205ENST00000558088 CDHR4A6H8M9 788 aa3.77□□□□□ -1.81
VPS13C-205ENST00000558088 KIAA0391O15091 583 aaKnown RBP3.77□□□□□ -1.81
VPS13C-205ENST00000558088 MPPED1O15442 326 aa3.77□□□□□ -1.81
VPS13C-205ENST00000558088 WT1P19544 449 aaPredicted RBP3.77□□□□□ -1.81
VPS13C-205ENST00000558088 SLC5A3P53794 718 aa3.77□□□□□ -1.81
VPS13C-205ENST00000558088 MALLQ13021 153 aa3.77□□□□□ -1.81
VPS13C-205ENST00000558088 FAM153CQ494X1 144 aa3.77□□□□□ -1.81
VPS13C-205ENST00000558088 TSTD2Q5T7W7 516 aa3.77□□□□□ -1.81
VPS13C-205ENST00000558088 CLNKQ7Z7G1 428 aa3.77□□□□□ -1.81
VPS13C-205ENST00000558088 ZNF366Q8N895 744 aa3.77□□□□□ -1.81
VPS13C-205ENST00000558088 NLGN4YQ8NFZ3 816 aaPredicted RBP3.77□□□□□ -1.81
VPS13C-205ENST00000558088 TBC1D15Q8TC07 691 aa3.77□□□□□ -1.81
VPS13C-205ENST00000558088 TGFBRAP1Q8WUH2 860 aa3.77□□□□□ -1.81
VPS13C-205ENST00000558088 C1QTNF7Q9BXJ2 289 aa3.77□□□□□ -1.81
VPS13C-205ENST00000558088 PIF1Q9H611 641 aa3.77□□□□□ -1.81
VPS13C-205ENST00000558088 MANSC1Q9H8J5 431 aa3.77□□□□□ -1.81
VPS13C-205ENST00000558088 INTS13Q9NVM9 706 aa3.77□□□□□ -1.81
VPS13C-205ENST00000558088 ZNF70Q9UC06 446 aaPredicted RBP3.77□□□□□ -1.81
VPS13C-205ENST00000558088 RUVBL1Q9Y265 456 aaKnown RBP3.77□□□□□ -1.81
VPS13C-205ENST00000558088 ACTL7AQ9Y615 435 aa3.77□□□□□ -1.81
VPS13C-205ENST00000558088 WNT6Q9Y6F9 365 aa3.77□□□□□ -1.81
VPS13C-205ENST00000558088 CCDC78A2IDD5 438 aa3.76□□□□□ -1.81
VPS13C-205ENST00000558088 MANSC4A6NHS7 340 aaPredicted RBP3.76□□□□□ -1.81
VPS13C-205ENST00000558088 NEMP1O14524 444 aa3.76□□□□□ -1.81
VPS13C-205ENST00000558088 PRSS23O95084 383 aa3.76□□□□□ -1.81
VPS13C-205ENST00000558088 SRGNP10124 158 aa3.76□□□□□ -1.81
VPS13C-205ENST00000558088 GSPT1P15170 499 aaKnown RBP3.76□□□□□ -1.81
VPS13C-205ENST00000558088 FPR1P21462 350 aa3.76□□□□□ -1.81
VPS13C-205ENST00000558088 GRIA3P42263 894 aa3.76□□□□□ -1.81
VPS13C-205ENST00000558088 PROK1P58294 105 aa3.76□□□□□ -1.81
VPS13C-205ENST00000558088 EXOSC10Q01780 885 aaKnown RBP3.76□□□□□ -1.81
VPS13C-205ENST00000558088 MGAT2Q10469 447 aa3.76□□□□□ -1.81
VPS13C-205ENST00000558088 MAPK7Q13164 816 aa3.76□□□□□ -1.81
VPS13C-205ENST00000558088 PREPLQ4J6C6 727 aaPredicted RBP3.76□□□□□ -1.81
VPS13C-205ENST00000558088 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP3.76□□□□□ -1.81
VPS13C-205ENST00000558088 C1QL2Q7Z5L3 287 aa3.76□□□□□ -1.81
VPS13C-205ENST00000558088 PEG10Q86TG7 708 aaKnown RBP3.76□□□□□ -1.81
VPS13C-205ENST00000558088 TOR1AIP2Q8NFQ8 470 aa3.76□□□□□ -1.81
VPS13C-205ENST00000558088 CCHCR1Q8TD31 782 aa3.76□□□□□ -1.81
VPS13C-205ENST00000558088 HOXB13Q92826 284 aaPredicted RBP3.76□□□□□ -1.81
VPS13C-205ENST00000558088 TMEM125Q96AQ2 219 aa3.76□□□□□ -1.81
VPS13C-205ENST00000558088 ZNF778Q96MU6 729 aa3.76□□□□□ -1.81
VPS13C-205ENST00000558088 GSTO2Q9H4Y5 243 aa3.76□□□□□ -1.81
VPS13C-205ENST00000558088 DMRT3Q9NQL9 472 aa3.76□□□□□ -1.81
VPS13C-205ENST00000558088 SLC23A1Q9UHI7 598 aa3.76□□□□□ -1.81
VPS13C-205ENST00000558088 SCOCQ9UIL1 159 aa3.76□□□□□ -1.81
VPS13C-205ENST00000558088 NEU2Q9Y3R4 380 aa3.76□□□□□ -1.81
VPS13C-205ENST00000558088 TCRBV7S2A1N4TA0A589 114 aa3.75□□□□□ -1.81
VPS13C-205ENST00000558088 WDR91A4D1P6 747 aa3.75□□□□□ -1.81
VPS13C-205ENST00000558088 HAUS5O94927 633 aa3.75□□□□□ -1.81
VPS13C-205ENST00000558088 PRKCGP05129 697 aa3.75□□□□□ -1.81
VPS13C-205ENST00000558088 MCAMP43121 646 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms