RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 SEMA4DQ92854 862 aa17.31■□□□□ 0.36
SHMT2-231ENST00000557433 RMDN2Q96LZ7 410 aa17.31■□□□□ 0.36
SHMT2-231ENST00000557433 MFSD14AQ96MC6 490 aa17.31■□□□□ 0.36
SHMT2-231ENST00000557433 FBXL18Q96ME1 805 aa17.31■□□□□ 0.36
SHMT2-231ENST00000557433 ADAM22Q9P0K1 906 aa17.31■□□□□ 0.36
SHMT2-231ENST00000557433 CTNNAL1Q9UBT7 734 aa17.31■□□□□ 0.36
SHMT2-231ENST00000557433 ZHX2Q9Y6X8 837 aa17.31■□□□□ 0.36
SHMT2-231ENST00000557433 RASA4BC9J798 803 aa17.3■□□□□ 0.36
SHMT2-231ENST00000557433 RASA4O43374 803 aa17.3■□□□□ 0.36
SHMT2-231ENST00000557433 DIAPH2O60879 1101 aa17.3■□□□□ 0.36
SHMT2-231ENST00000557433 SF3A3Q12874 501 aaKnown RBP eCLIP17.3■□□□□ 0.366e-8■■□□□ 12.4
SHMT2-231ENST00000557433 SLC27A3Q5K4L6 730 aa17.3■□□□□ 0.36
SHMT2-231ENST00000557433 LIN9Q5TKA1 542 aa17.3■□□□□ 0.36
SHMT2-231ENST00000557433 IZUMO3Q5VZ72 239 aa17.3■□□□□ 0.36
SHMT2-231ENST00000557433 CCDC174Q6PII3 467 aa17.3■□□□□ 0.36
SHMT2-231ENST00000557433 NSMFQ6X4W1 530 aa17.3■□□□□ 0.36
SHMT2-231ENST00000557433 SLC30A10Q6XR72 485 aa17.3■□□□□ 0.36
SHMT2-231ENST00000557433 ANKS1BQ7Z6G8 1248 aa17.3■□□□□ 0.36
SHMT2-231ENST00000557433 CPNE8Q86YQ8 564 aa17.3■□□□□ 0.36
SHMT2-231ENST00000557433 MAP4K3Q8IVH8 894 aa17.3■□□□□ 0.36
SHMT2-231ENST00000557433 RHOT1Q8IXI2 618 aa17.3■□□□□ 0.36
SHMT2-231ENST00000557433 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.3■□□□□ 0.36
SHMT2-231ENST00000557433 FAXDC2Q96IV6 333 aa17.3■□□□□ 0.36
SHMT2-231ENST00000557433 PNMA3Q9UL41 463 aa17.3■□□□□ 0.36
SHMT2-231ENST00000557433 TISP43B9A030 160 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 ASMTLO95671 621 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 CALRP27797 417 aaKnown RBP17.29■□□□□ 0.36
SHMT2-231ENST00000557433 HSD17B4P51659 736 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 DACT2Q5SW24 774 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 DRICH1Q6PGQ1 229 aaPredicted RBP17.29■□□□□ 0.36
SHMT2-231ENST00000557433 KIAA0825Q8IV33 1275 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 C4orf19Q8IY42 314 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 EXD1Q8NHP7 514 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 VCPIP1Q96JH7 1222 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 ETNK1Q9HBU6 452 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 TBC1D22BQ9NU19 505 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 GGT7Q9UJ14 662 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 STK38LQ9Y2H1 464 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 PCDHB2Q9Y5E7 798 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 MROH7Q68CQ1 1323 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 GSTTP1A0A1W2PQM5 241 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 GH1P01241 217 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 ABCD1P33897 745 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 MAGEA4P43358 317 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 TRABD2AQ86V40 505 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 APLFQ8IW19 511 aaPredicted RBP17.29■□□□□ 0.36
SHMT2-231ENST00000557433 CYP4X1Q8N118 509 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 KIF2BQ8N4N8 673 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 ZNF398Q8TD17 642 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 ATG4AQ8WYN0 398 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 ZNF570Q96NI8 536 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 C17orf75Q9HAS0 396 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 MRPL47Q9HD33 250 aaKnown RBP17.29■□□□□ 0.36
SHMT2-231ENST00000557433 SSU72Q9NP77 194 aaKnown RBP17.29■□□□□ 0.36
SHMT2-231ENST00000557433 ANKEF1Q9NU02 776 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 TBX20Q9UMR3 447 aa17.29■□□□□ 0.36
SHMT2-231ENST00000557433 KLRC2P26717 231 aa17.28■□□□□ 0.36
SHMT2-231ENST00000557433 MGAT5Q09328 741 aa17.28■□□□□ 0.36
SHMT2-231ENST00000557433 ANKRD20A2Q5SQ80 823 aa17.28■□□□□ 0.36
SHMT2-231ENST00000557433 ANKRD20A1Q5TYW2 823 aa17.28■□□□□ 0.36
SHMT2-231ENST00000557433 ANKRD20A3Q5VUR7 823 aa17.28■□□□□ 0.36
SHMT2-231ENST00000557433 VSIG1Q86XK7 387 aa17.28■□□□□ 0.36
SHMT2-231ENST00000557433 CBWD2Q8IUF1 395 aa17.28■□□□□ 0.36
SHMT2-231ENST00000557433 SPICE1Q8N0Z3 855 aa17.28■□□□□ 0.36
SHMT2-231ENST00000557433 SAMD3Q8N6K7 520 aa17.28■□□□□ 0.36
SHMT2-231ENST00000557433 DENND1AQ8TEH3 1009 aa17.28■□□□□ 0.36
SHMT2-231ENST00000557433 LRRC37BQ96QE4 947 aa17.28■□□□□ 0.36
SHMT2-231ENST00000557433 KCNH7Q9NS40 1196 aa17.28■□□□□ 0.36
SHMT2-231ENST00000557433 FEM1BQ9UK73 627 aa17.28■□□□□ 0.36
SHMT2-231ENST00000557433 CORO1CQ9ULV4 474 aaPredicted RBP17.28■□□□□ 0.36
SHMT2-231ENST00000557433 NFASCO94856 1347 aa17.28■□□□□ 0.36
SHMT2-231ENST00000557433 TRAFD1O14545 582 aaPredicted RBP17.27■□□□□ 0.36
SHMT2-231ENST00000557433 ABLIM1O14639 778 aa17.27■□□□□ 0.36
SHMT2-231ENST00000557433 CLGNO14967 610 aa17.27■□□□□ 0.36
SHMT2-231ENST00000557433 DHX15O43143 795 aaKnown RBP17.27■□□□□ 0.36
SHMT2-231ENST00000557433 ITGB5P18084 799 aa17.27■□□□□ 0.36
SHMT2-231ENST00000557433 YWHABP31946 246 aaKnown RBP17.27■□□□□ 0.36
SHMT2-231ENST00000557433 FOXN2P32314 431 aa17.27■□□□□ 0.36
SHMT2-231ENST00000557433 NSFP46459 744 aaKnown RBP17.27■□□□□ 0.36
SHMT2-231ENST00000557433 UBXN2AP68543 259 aa17.27■□□□□ 0.36
SHMT2-231ENST00000557433 IRX1P78414 480 aaPredicted RBP17.27■□□□□ 0.36
SHMT2-231ENST00000557433 GHRHRQ02643 423 aa17.27■□□□□ 0.36
SHMT2-231ENST00000557433 PDK4Q16654 411 aa17.27■□□□□ 0.36
SHMT2-231ENST00000557433 WASHC2DQ5SRD0 308 aa17.27■□□□□ 0.36
SHMT2-231ENST00000557433 CC2D2BQ6DHV5 1058 aa17.27■□□□□ 0.36
SHMT2-231ENST00000557433 MAEAQ7L5Y9 396 aa17.27■□□□□ 0.36
SHMT2-231ENST00000557433 ERICH1Q86X53 443 aa17.27■□□□□ 0.36
SHMT2-231ENST00000557433 OGFOD1Q8N543 542 aa17.27■□□□□ 0.36
SHMT2-231ENST00000557433 SPIRE2Q8WWL2 714 aa17.27■□□□□ 0.36
SHMT2-231ENST00000557433 C8orf37Q96NL8 207 aa17.27■□□□□ 0.36
SHMT2-231ENST00000557433 RBM15Q96T37 977 aaKnown RBP eCLIP17.27■□□□□ 0.36
SHMT2-231ENST00000557433 OSBPL8Q9BZF1 889 aa17.27■□□□□ 0.36
SHMT2-231ENST00000557433 RNPEPL1Q9HAU8 725 aa17.27■□□□□ 0.36
SHMT2-231ENST00000557433 MLXIPLQ9NP71 852 aa17.27■□□□□ 0.36
SHMT2-231ENST00000557433 SCINQ9Y6U3 715 aa17.27■□□□□ 0.36
SHMT2-231ENST00000557433 EXOC1LA0A1B0GW35 172 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 FAM170AA1A519 330 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 SLC16A4O15374 487 aa17.27■□□□□ 0.35
SHMT2-231ENST00000557433 CYP1A1P04798 512 aaPredicted RBP17.27■□□□□ 0.35
SHMT2-231ENST00000557433 RALAP11233 206 aa17.27■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms