RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 CYP3A5P20815 502 aa15.43■□□□□ 0.06
SHMT2-217ENST00000555116 LRPAP1P30533 357 aa15.43■□□□□ 0.06
SHMT2-217ENST00000555116 BMS1Q14692 1282 aaKnown RBP15.43■□□□□ 0.06
SHMT2-217ENST00000555116 DUSP6Q16828 381 aa15.43■□□□□ 0.06
SHMT2-217ENST00000555116 HS2ST1Q7LGA3 356 aa15.43■□□□□ 0.06
SHMT2-217ENST00000555116 ERCC4Q92889 916 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-217ENST00000555116 PABPC5Q96DU9 382 aaKnown RBP15.43■□□□□ 0.06
SHMT2-217ENST00000555116 FBXL18Q96ME1 805 aa15.43■□□□□ 0.06
SHMT2-217ENST00000555116 IGFLR1Q9H665 355 aa15.43■□□□□ 0.06
SHMT2-217ENST00000555116 CGNQ9P2M7 1197 aaKnown RBP15.43■□□□□ 0.06
SHMT2-217ENST00000555116 COG5Q9UP83 839 aa15.43■□□□□ 0.06
SHMT2-217ENST00000555116 PCDHA5Q9Y5H7 936 aa15.43■□□□□ 0.06
SHMT2-217ENST00000555116 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-217ENST00000555116 SF3B1O75533 1304 aaKnown RBP eCLIP15.42■□□□□ 0.065e-8■■■■■ 37.4
SHMT2-217ENST00000555116 LINC01565O15544 149 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 NCK2O43639 380 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 B3GAT3O94766 335 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 IL18RAPO95256 599 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 GUCY2FP51841 1108 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 DSG1Q02413 1049 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 ADAM15Q13444 863 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 TMEM132DQ14C87 1099 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 KIAA0319Q5VV43 1072 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 SPATA1Q5VX52 437 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 EFCAB13Q8IY85 973 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 EFHBQ8N7U6 833 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 HLA-CQ95604 372 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 B3GALT6Q96L58 329 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 GSDMAQ96QA5 445 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 CDCA3Q99618 268 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-217ENST00000555116 UBE2ZQ9H832 354 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-217ENST00000555116 THEGQ9P2T0 379 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 HOOK1Q9UJC3 728 aaKnown RBP15.42■□□□□ 0.06
SHMT2-217ENST00000555116 C2CD2Q9Y426 696 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-217ENST00000555116 CLASP2O75122 1294 aaKnown RBP15.42■□□□□ 0.06
SHMT2-217ENST00000555116 SMC2O95347 1197 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 URODP06132 367 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 LTBRP36941 435 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 GLUD2P49448 558 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 KCNC3Q14003 757 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 USP41Q3LFD5 358 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 CBWD2Q8IUF1 395 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 VN1R2Q8NFZ6 395 aa15.42■□□□□ 0.06
SHMT2-217ENST00000555116 MRPL17Q9NRX2 175 aaKnown RBP15.42■□□□□ 0.06
SHMT2-217ENST00000555116 RBAKQ9NYW8 714 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-217ENST00000555116 XPOTO43592 962 aaKnown RBP15.41■□□□□ 0.06
SHMT2-217ENST00000555116 GLP2RO95838 553 aa15.41■□□□□ 0.06
SHMT2-217ENST00000555116 BRCC3P46736 316 aa15.41■□□□□ 0.06
SHMT2-217ENST00000555116 CYP2J2P51589 502 aa15.41■□□□□ 0.06
SHMT2-217ENST00000555116 ELAVL2Q12926 359 aaKnown RBP15.41■□□□□ 0.06
SHMT2-217ENST00000555116 FAM171A1Q5VUB5 890 aa15.41■□□□□ 0.06
SHMT2-217ENST00000555116 CAVIN1Q6NZI2 390 aaKnown RBP15.41■□□□□ 0.06
SHMT2-217ENST00000555116 GAS2L3Q86XJ1 694 aa15.41■□□□□ 0.06
SHMT2-217ENST00000555116 GPR65Q8IYL9 337 aa15.41■□□□□ 0.06
SHMT2-217ENST00000555116 GUF1Q8N442 669 aaKnown RBP15.41■□□□□ 0.06
SHMT2-217ENST00000555116 BEST2Q8NFU1 509 aa15.41■□□□□ 0.06
SHMT2-217ENST00000555116 GOLGA5Q8TBA6 731 aa15.41■□□□□ 0.06
SHMT2-217ENST00000555116 NOC3LQ8WTT2 800 aaKnown RBP15.41■□□□□ 0.06
SHMT2-217ENST00000555116 SMARCE1Q969G3 411 aa15.41■□□□□ 0.06
SHMT2-217ENST00000555116 RXFP1Q9HBX9 757 aa15.41■□□□□ 0.06
SHMT2-217ENST00000555116 KIAA1586Q9HCI6 787 aa15.41■□□□□ 0.06
SHMT2-217ENST00000555116 DMAC2Q9NW81 257 aa15.41■□□□□ 0.06
SHMT2-217ENST00000555116 RMND1Q9NWS8 449 aa15.41■□□□□ 0.06
SHMT2-217ENST00000555116 CLDND1Q9NY35 253 aa15.41■□□□□ 0.06
SHMT2-217ENST00000555116 TCF20Q9UGU0 1960 aaKnown RBP15.4■□□□□ 0.06
SHMT2-217ENST00000555116 ZNF233A6NK53 670 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 I3L4J1 428 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 PDXKO00764 312 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 C2CD2LO14523 706 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 FGFR3P22607 806 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 CA8P35219 290 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 MRE11P49959 708 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 RBM10P98175 930 aaKnown RBP15.4■□□□□ 0.06
SHMT2-217ENST00000555116 TFF2Q03403 129 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 DLX2Q07687 328 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-217ENST00000555116 RTP2Q5QGT7 225 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 NT5DC4Q86YG4 428 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.4■□□□□ 0.06
SHMT2-217ENST00000555116 SMYD4Q8IYR2 804 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-217ENST00000555116 XXYLT1Q8NBI6 393 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 TMEM174Q8WUU8 243 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 KLHL5Q96PQ7 755 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 PDE11AQ9HCR9 933 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 MAPK8IP1Q9UQF2 711 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 SSX2IPQ9Y2D8 614 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 PPEF2O14830 753 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 TBX10O75333 385 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 KIF20AO95235 890 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 MBD3O95983 291 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 CNPP09543 421 aaKnown RBP15.4■□□□□ 0.06
SHMT2-217ENST00000555116 ZNF658Q5TYW1 1059 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-217ENST00000555116 KIAA1841Q6NSI8 718 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-217ENST00000555116 SLC9A9Q8IVB4 645 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 RIN2Q8WYP3 895 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-217ENST00000555116 TTPALQ9BTX7 342 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 TRAF3IP3Q9Y228 551 aa15.4■□□□□ 0.06
SHMT2-217ENST00000555116 ANO9A1A5B4 782 aa15.39■□□□□ 0.05
SHMT2-217ENST00000555116 KCNA5P22460 613 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms