RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 WDR81Q562E7 1941 aa13.06□□□□□ -0.32
SHMT2-207ENST00000553837 ANKRD62A6NC57 917 aa13.06□□□□□ -0.32
SHMT2-207ENST00000553837 WDR64B1ANS9 1081 aa13.06□□□□□ -0.32
SHMT2-207ENST00000553837 ABLIM1O14639 778 aa13.06□□□□□ -0.32
SHMT2-207ENST00000553837 OAS1P00973 400 aaKnown RBP13.06□□□□□ -0.32
SHMT2-207ENST00000553837 SHBGP04278 402 aa13.06□□□□□ -0.32
SHMT2-207ENST00000553837 GMPSP49915 693 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-207ENST00000553837 POU5F1Q01860 360 aaKnown RBP13.06□□□□□ -0.32
SHMT2-207ENST00000553837 ZNF211Q13398 564 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-207ENST00000553837 LAMB3Q13751 1172 aa13.06□□□□□ -0.32
SHMT2-207ENST00000553837 SPATA21Q7Z572 469 aa13.06□□□□□ -0.32
SHMT2-207ENST00000553837 NOP9Q86U38 636 aaKnown RBP13.06□□□□□ -0.32
SHMT2-207ENST00000553837 VSIG10LQ86VR7 867 aa13.06□□□□□ -0.32
SHMT2-207ENST00000553837 CPNE8Q86YQ8 564 aa13.06□□□□□ -0.32
SHMT2-207ENST00000553837 EZH1Q92800 747 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-207ENST00000553837 AZI2Q9H6S1 392 aa13.06□□□□□ -0.32
SHMT2-207ENST00000553837 PAPOLBQ9NRJ5 636 aaKnown RBP13.06□□□□□ -0.32
SHMT2-207ENST00000553837 MAP3K20Q9NYL2 800 aaKnown RBP13.06□□□□□ -0.32
SHMT2-207ENST00000553837 ADAM22Q9P0K1 906 aa13.06□□□□□ -0.32
SHMT2-207ENST00000553837 TBX20Q9UMR3 447 aa13.06□□□□□ -0.32
SHMT2-207ENST00000553837 STK38LQ9Y2H1 464 aa13.06□□□□□ -0.32
SHMT2-207ENST00000553837 ADGRA3Q8IWK6 1321 aa13.06□□□□□ -0.32
SHMT2-207ENST00000553837 O00370 1275 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 SORBS3O60504 671 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 ZBED4O75132 1171 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 FGGP02679 453 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 FTLP02792 175 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-207ENST00000553837 GBP1P32455 592 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 ABL2P42684 1182 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 GCLCP48506 637 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-207ENST00000553837 CTCFP49711 727 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-207ENST00000553837 JAK3P52333 1124 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 MCCD1P59942 119 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-207ENST00000553837 LMNB2Q03252 620 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 SNX1Q13596 522 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 TAOK1Q7L7X3 1001 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 ADAT2Q7Z6V5 191 aaKnown RBP13.05□□□□□ -0.32
SHMT2-207ENST00000553837 FAM167BQ9BTA0 163 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 TRIM7Q9C029 511 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 ERVK-5Q9HDB9 667 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 NOCTQ9UK39 431 aaKnown RBP13.05□□□□□ -0.32
SHMT2-207ENST00000553837 LRRC42Q9Y546 428 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 LRRD1A4D1F6 860 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 E7ENQ6 273 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 P4HA2O15460 535 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 SMIM24O75264 130 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 ZBTB7AO95365 584 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 NR3C2P08235 984 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 RFX1P22670 979 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 CD151P48509 253 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 MARCKSL1P49006 195 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 MXI1P50539 228 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 BACE1P56817 501 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 IFI35P80217 286 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-207ENST00000553837 TNFAIP1Q13829 316 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 SNRNP35Q16560 246 aaKnown RBP13.05□□□□□ -0.32
SHMT2-207ENST00000553837 DALRD3Q5D0E6 543 aaKnown RBP13.05□□□□□ -0.32
SHMT2-207ENST00000553837 ASRGL1Q7L266 308 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 SLC47A2Q86VL8 602 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 LMNTD2Q8IXW0 634 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 ZFAND2BQ8WV99 257 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 CCDC127Q96BQ5 260 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 RAB3IPQ96QF0 476 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-207ENST00000553837 TMEM109Q9BVC6 243 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 EPB41L4BQ9H329 900 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 ANKEF1Q9NU02 776 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 TMOD4Q9NZQ9 345 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 GABBR1Q9UBS5 961 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 TTC7AQ9ULT0 858 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-207ENST00000553837 PCDHGA4Q9Y5G9 962 aa13.05□□□□□ -0.32
SHMT2-207ENST00000553837 DENND3A2RUS2 1198 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 MAPK13O15264 365 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 CYP26A1O43174 497 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 ATMINO43313 823 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-207ENST00000553837 CALCAP01258 141 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 KCNA2P16389 499 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 CNGA1P29973 690 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 MRPS35P82673 323 aaKnown RBP13.04□□□□□ -0.32
SHMT2-207ENST00000553837 KRT76Q01546 638 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 CNGA2Q16280 664 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 HHATQ5VTY9 493 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 DUPD1Q68J44 220 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 MAP4K3Q8IVH8 894 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 FAM71AQ8IYT1 594 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 EPS8L1Q8TE68 723 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 ATP8B4Q8TF62 1192 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 KRT35Q92764 455 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 ERP44Q9BS26 406 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 TRIM31Q9BZY9 425 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 MTFR1LQ9H019 292 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 ZDHHC18Q9NUE0 388 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 USP20Q9Y2K6 914 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 ARL2BPQ9Y2Y0 163 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 CTDP1Q9Y5B0 961 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-207ENST00000553837 CD2APQ9Y5K6 639 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 ALG6Q9Y672 507 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 KIAA1217Q5T5P2 1943 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 DOCK1Q14185 1865 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 FAM187AA6NFU0 413 aa13.04□□□□□ -0.32
SHMT2-207ENST00000553837 A8MUI8 341 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms