RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 MS4A14Q96JA4 679 aa28.25■■■□□ 2.11
CCDC88C-205ENST00000553403 FDXACB1Q9BRP7 624 aaPredicted RBP28.25■■■□□ 2.11
CCDC88C-205ENST00000553403 GOLPH3Q9H4A6 298 aa28.25■■■□□ 2.11
CCDC88C-205ENST00000553403 GNEQ9Y223 722 aaKnown RBP28.25■■■□□ 2.11
CCDC88C-205ENST00000553403 A6NJR5 290 aa28.24■■■□□ 2.11
CCDC88C-205ENST00000553403 KCNK3O14649 394 aa28.24■■■□□ 2.11
CCDC88C-205ENST00000553403 SEC31AO94979 1220 aaKnown RBP28.24■■■□□ 2.11
CCDC88C-205ENST00000553403 ASS1P00966 412 aaKnown RBP28.24■■■□□ 2.11
CCDC88C-205ENST00000553403 SLC10A3P09131 477 aa28.24■■■□□ 2.11
CCDC88C-205ENST00000553403 MCF2P10911 925 aa28.24■■■□□ 2.11
CCDC88C-205ENST00000553403 CLEC16AQ2KHT3 1053 aa28.24■■■□□ 2.11
CCDC88C-205ENST00000553403 IFNL1Q8IU54 200 aa28.24■■■□□ 2.11
CCDC88C-205ENST00000553403 THNSL1Q8IYQ7 743 aa28.24■■■□□ 2.11
CCDC88C-205ENST00000553403 EHD2Q9NZN4 543 aa28.24■■■□□ 2.11
CCDC88C-205ENST00000553403 COG5Q9UP83 839 aa28.24■■■□□ 2.11
CCDC88C-205ENST00000553403 NUB1Q9Y5A7 615 aa28.24■■■□□ 2.11
CCDC88C-205ENST00000553403 ADCY6O43306 1168 aa28.23■■■□□ 2.11
CCDC88C-205ENST00000553403 CYP1A2P05177 515 aa28.23■■■□□ 2.11
CCDC88C-205ENST00000553403 IQCF3P0C7M6 154 aa28.23■■■□□ 2.11
CCDC88C-205ENST00000553403 DNA2P51530 1060 aa28.23■■■□□ 2.11
CCDC88C-205ENST00000553403 KYAT1Q16773 422 aa28.23■■■□□ 2.11
CCDC88C-205ENST00000553403 MARCH8Q5T0T0 291 aa28.23■■■□□ 2.11
CCDC88C-205ENST00000553403 C11orf63Q6NUN7 778 aa28.23■■■□□ 2.11
CCDC88C-205ENST00000553403 FAM212AQ96EL1 285 aa28.23■■■□□ 2.11
CCDC88C-205ENST00000553403 RPF1Q9H9Y2 349 aaKnown RBP28.23■■■□□ 2.11
CCDC88C-205ENST00000553403 SMARCAL1Q9NZC9 954 aa28.23■■■□□ 2.11
CCDC88C-205ENST00000553403 CTTNBP2NLQ9P2B4 639 aa28.23■■■□□ 2.11
CCDC88C-205ENST00000553403 OLFML2BQ68BL8 750 aa28.23■■■□□ 2.11
CCDC88C-205ENST00000553403 ZNF410Q86VK4 478 aa28.23■■■□□ 2.11
CCDC88C-205ENST00000553403 TNS4Q8IZW8 715 aa28.23■■■□□ 2.11
CCDC88C-205ENST00000553403 ACTRT1Q8TDG2 376 aa28.23■■■□□ 2.11
CCDC88C-205ENST00000553403 MTMR12Q9C0I1 747 aa28.23■■■□□ 2.11
CCDC88C-205ENST00000553403 GTF3C4Q9UKN8 822 aa28.23■■■□□ 2.11
CCDC88C-205ENST00000553403 PCDHB4Q9Y5E5 795 aa28.23■■■□□ 2.11
CCDC88C-205ENST00000553403 DYNC1LI2O43237 492 aaPredicted RBP28.22■■■□□ 2.11
CCDC88C-205ENST00000553403 VTNP04004 478 aa28.22■■■□□ 2.11
CCDC88C-205ENST00000553403 ZNF865P0CJ78 1059 aaPredicted RBP28.22■■■□□ 2.11
CCDC88C-205ENST00000553403 LONRF2Q1L5Z9 754 aa28.22■■■□□ 2.11
CCDC88C-205ENST00000553403 SGSM1Q2NKQ1 1148 aa28.22■■■□□ 2.11
CCDC88C-205ENST00000553403 GLE1Q53GS7 698 aaKnown RBP28.22■■■□□ 2.11
CCDC88C-205ENST00000553403 BEND6Q5SZJ8 279 aaPredicted RBP28.22■■■□□ 2.11
CCDC88C-205ENST00000553403 ANKRD36BP1Q96IX9 119 aa28.22■■■□□ 2.11
CCDC88C-205ENST00000553403 TNNC2P02585 160 aa28.21■■■□□ 2.11
CCDC88C-205ENST00000553403 NOGQ13253 232 aa28.21■■■□□ 2.11
CCDC88C-205ENST00000553403 KIAA0319LQ8IZA0 1049 aa28.21■■■□□ 2.11
CCDC88C-205ENST00000553403 UBR7Q8N806 425 aa28.21■■■□□ 2.11
CCDC88C-205ENST00000553403 ZFYVE28Q9HCC9 887 aa28.21■■■□□ 2.11
CCDC88C-205ENST00000553403 FLRT1Q9NZU1 646 aa28.21■■■□□ 2.11
CCDC88C-205ENST00000553403 GPR25O00155 361 aa28.2■■■□□ 2.11
CCDC88C-205ENST00000553403 CST3P01034 146 aaPredicted RBP28.2■■■□□ 2.11
CCDC88C-205ENST00000553403 TMEM191BP0C7N4 346 aa28.2■■■□□ 2.11
CCDC88C-205ENST00000553403 RGS2P41220 211 aa28.2■■■□□ 2.11
CCDC88C-205ENST00000553403 PRAMEF19Q5SWL8 479 aa28.2■■■□□ 2.11
CCDC88C-205ENST00000553403 TRIM72Q6ZMU5 477 aa28.2■■■□□ 2.11
CCDC88C-205ENST00000553403 RASGEF1CQ8N431 466 aa28.2■■■□□ 2.11
CCDC88C-205ENST00000553403 USP38Q8NB14 1042 aa28.2■■■□□ 2.11
CCDC88C-205ENST00000553403 SOCS4Q8WXH5 440 aa28.2■■■□□ 2.11
CCDC88C-205ENST00000553403 CCDC102AQ96A19 550 aa28.2■■■□□ 2.11
CCDC88C-205ENST00000553403 PDZD7Q9H5P4 517 aa28.2■■■□□ 2.11
CCDC88C-205ENST00000553403 RBM12Q9NTZ6 932 aaKnown RBP28.2■■■□□ 2.11
CCDC88C-205ENST00000553403 RNF216Q9NWF9 866 aaPredicted RBP28.2■■■□□ 2.11
CCDC88C-205ENST00000553403 UVRAGQ9P2Y5 699 aa28.2■■■□□ 2.11
CCDC88C-205ENST00000553403 TBC1D8O95759 1140 aa28.19■■■□□ 2.1
CCDC88C-205ENST00000553403 UNGP13051 313 aaPredicted RBP28.19■■■□□ 2.1
CCDC88C-205ENST00000553403 CDC42EP1Q00587 391 aa28.19■■■□□ 2.1
CCDC88C-205ENST00000553403 TRPC3Q13507 836 aa28.19■■■□□ 2.1
CCDC88C-205ENST00000553403 EFCAB13Q8IY85 973 aa28.19■■■□□ 2.1
CCDC88C-205ENST00000553403 NLRP7Q8WX94 980 aa28.19■■■□□ 2.1
CCDC88C-205ENST00000553403 Q9Y3F1 56 aa28.19■■■□□ 2.1
CCDC88C-205ENST00000553403 UMODL1Q5DID0 1318 aa28.19■■■□□ 2.1
CCDC88C-205ENST00000553403 DDX3YO15523 660 aaKnown RBP28.19■■■□□ 2.1
CCDC88C-205ENST00000553403 CEP104O60308 925 aa28.19■■■□□ 2.1
CCDC88C-205ENST00000553403 F2P00734 622 aa28.19■■■□□ 2.1
CCDC88C-205ENST00000553403 MYL6P60660 151 aa28.19■■■□□ 2.1
CCDC88C-205ENST00000553403 TFAMQ00059 246 aaKnown RBP28.19■■■□□ 2.1
CCDC88C-205ENST00000553403 CEP120Q8N960 986 aa28.19■■■□□ 2.1
CCDC88C-205ENST00000553403 RBBP8NLQ8NC74 664 aaPredicted RBP28.19■■■□□ 2.1
CCDC88C-205ENST00000553403 ZNF653Q96CK0 615 aa28.19■■■□□ 2.1
CCDC88C-205ENST00000553403 TRIM11Q96F44 468 aa28.19■■■□□ 2.1
CCDC88C-205ENST00000553403 RPS6KC1Q96S38 1066 aa28.19■■■□□ 2.1
CCDC88C-205ENST00000553403 NIF3L1Q9GZT8 377 aa28.19■■■□□ 2.1
CCDC88C-205ENST00000553403 PRDM10Q9NQV6 1147 aa28.19■■■□□ 2.1
CCDC88C-205ENST00000553403 TMEM59LQ9UK28 342 aa28.19■■■□□ 2.1
CCDC88C-205ENST00000553403 CYP1A1P04798 512 aaPredicted RBP28.18■■■□□ 2.1
CCDC88C-205ENST00000553403 STAG3L1P0CL83 205 aa28.18■■■□□ 2.1
CCDC88C-205ENST00000553403 ZNF132P52740 706 aa28.18■■■□□ 2.1
CCDC88C-205ENST00000553403 LBX1P52954 281 aa28.18■■■□□ 2.1
CCDC88C-205ENST00000553403 MAP9Q49MG5 647 aa28.18■■■□□ 2.1
CCDC88C-205ENST00000553403 PPP1R2P3Q6NXS1 205 aa28.18■■■□□ 2.1
CCDC88C-205ENST00000553403 TMEM270Q6UE05 265 aa28.18■■■□□ 2.1
CCDC88C-205ENST00000553403 TLK2Q86UE8 772 aa28.18■■■□□ 2.1
CCDC88C-205ENST00000553403 CDR2LQ86X02 465 aaPredicted RBP28.18■■■□□ 2.1
CCDC88C-205ENST00000553403 APBA2Q99767 749 aa28.18■■■□□ 2.1
CCDC88C-205ENST00000553403 LRRC1Q9BTT6 524 aa28.18■■■□□ 2.1
CCDC88C-205ENST00000553403 GJD2Q9UKL4 321 aa28.18■■■□□ 2.1
CCDC88C-205ENST00000553403 TTC7AQ9ULT0 858 aaPredicted RBP28.18■■■□□ 2.1
CCDC88C-205ENST00000553403 IGHA2P01877 340 aa28.17■■■□□ 2.1
CCDC88C-205ENST00000553403 MYBL1P10243 752 aa28.17■■■□□ 2.1
CCDC88C-205ENST00000553403 ARF4P18085 180 aaPredicted RBP28.17■■■□□ 2.1
CCDC88C-205ENST00000553403 BUD13Q9BRD0 619 aaKnown RBP eCLIP28.17■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms