RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 HIP1RO75146 1068 aa16.97■□□□□ 0.31
CLSTN3-213ENST00000541953 ABLIM3O94929 683 aa16.97■□□□□ 0.31
CLSTN3-213ENST00000541953 PROZP22891 400 aa16.97■□□□□ 0.31
CLSTN3-213ENST00000541953 EFNA5P52803 228 aa16.97■□□□□ 0.31
CLSTN3-213ENST00000541953 ARPP19P56211 112 aa16.97■□□□□ 0.31
CLSTN3-213ENST00000541953 PRKCQQ04759 706 aa16.97■□□□□ 0.31
CLSTN3-213ENST00000541953 GRM2Q14416 872 aa16.97■□□□□ 0.31
CLSTN3-213ENST00000541953 SAFBQ15424 915 aaKnown RBP eCLIP16.97■□□□□ 0.31
CLSTN3-213ENST00000541953 ZNF568Q3ZCX4 644 aa16.97■□□□□ 0.31
CLSTN3-213ENST00000541953 HAUS3Q68CZ6 603 aa16.97■□□□□ 0.31
CLSTN3-213ENST00000541953 PDXDC1Q6P996 788 aa16.97■□□□□ 0.31
CLSTN3-213ENST00000541953 IGSF22Q8N9C0 903 aa16.97■□□□□ 0.31
CLSTN3-213ENST00000541953 FBXO18Q8NFZ0 1043 aa16.97■□□□□ 0.31
CLSTN3-213ENST00000541953 SNX29Q8TEQ0 813 aa16.97■□□□□ 0.31
CLSTN3-213ENST00000541953 KIFAP3Q92845 792 aa16.97■□□□□ 0.31
CLSTN3-213ENST00000541953 SHDQ96IW2 340 aa16.97■□□□□ 0.31
CLSTN3-213ENST00000541953 MMTAG2Q9BU76 263 aaKnown RBP16.97■□□□□ 0.31
CLSTN3-213ENST00000541953 ARHGAP28Q9P2N2 729 aa16.97■□□□□ 0.31
CLSTN3-213ENST00000541953 LRWD1Q9UFC0 647 aa16.97■□□□□ 0.31
CLSTN3-213ENST00000541953 KCNH3Q9ULD8 1083 aa16.97■□□□□ 0.31
CLSTN3-213ENST00000541953 ARHGEF37A1IGU5 675 aa16.96■□□□□ 0.31
CLSTN3-213ENST00000541953 SFI1A8K8P3 1242 aa16.96■□□□□ 0.31
CLSTN3-213ENST00000541953 K7ERI5 159 aa16.96■□□□□ 0.31
CLSTN3-213ENST00000541953 MOSPD3O75425 235 aa16.96■□□□□ 0.31
CLSTN3-213ENST00000541953 HARSP12081 509 aaKnown RBP16.96■□□□□ 0.31
CLSTN3-213ENST00000541953 ORC2Q13416 577 aaPredicted RBP16.96■□□□□ 0.31
CLSTN3-213ENST00000541953 ANKS3Q6ZW76 656 aa16.96■□□□□ 0.31
CLSTN3-213ENST00000541953 HS6ST3Q8IZP7 471 aa16.96■□□□□ 0.31
CLSTN3-213ENST00000541953 ZNF687Q8N1G0 1237 aa16.96■□□□□ 0.31
CLSTN3-213ENST00000541953 ZSWIM3Q96MP5 696 aa16.96■□□□□ 0.31
CLSTN3-213ENST00000541953 UROC1Q96N76 676 aa16.96■□□□□ 0.31
CLSTN3-213ENST00000541953 HINFPQ9BQA5 517 aa16.96■□□□□ 0.31
CLSTN3-213ENST00000541953 CORO1BQ9BR76 489 aa16.96■□□□□ 0.31
CLSTN3-213ENST00000541953 HAPLN2Q9GZV7 340 aa16.96■□□□□ 0.31
CLSTN3-213ENST00000541953 TUBGCP4Q9UGJ1 667 aa16.96■□□□□ 0.31
CLSTN3-213ENST00000541953 ECI2O75521 394 aa16.95■□□□□ 0.3
CLSTN3-213ENST00000541953 VNN2O95498 520 aa16.95■□□□□ 0.3
CLSTN3-213ENST00000541953 GJA1P17302 382 aa16.95■□□□□ 0.3
CLSTN3-213ENST00000541953 MUTP22033 750 aa16.95■□□□□ 0.3
CLSTN3-213ENST00000541953 CSTF1Q05048 431 aaKnown RBP16.95■□□□□ 0.3
CLSTN3-213ENST00000541953 RAD51AP2Q09MP3 1159 aa16.95■□□□□ 0.3
CLSTN3-213ENST00000541953 PTGDRQ13258 359 aa16.95■□□□□ 0.3
CLSTN3-213ENST00000541953 MRPL58Q14197 206 aaKnown RBP16.95■□□□□ 0.3
CLSTN3-213ENST00000541953 FAM78AQ5JUQ0 283 aa16.95■□□□□ 0.3
CLSTN3-213ENST00000541953 ZC3H14Q6PJT7 736 aaKnown RBP16.95■□□□□ 0.3
CLSTN3-213ENST00000541953 ZNF461Q8TAF7 563 aa16.95■□□□□ 0.3
CLSTN3-213ENST00000541953 RUBCNQ92622 972 aa16.95■□□□□ 0.3
CLSTN3-213ENST00000541953 CLDN23Q96B33 292 aa16.95■□□□□ 0.3
CLSTN3-213ENST00000541953 BCO2Q9BYV7 579 aa16.95■□□□□ 0.3
CLSTN3-213ENST00000541953 AVENQ9NQS1 362 aaPredicted RBP16.95■□□□□ 0.3
CLSTN3-213ENST00000541953 FBXL5Q9UKA1 691 aa16.95■□□□□ 0.3
CLSTN3-213ENST00000541953 INSL5Q9Y5Q6 135 aa16.95■□□□□ 0.3
CLSTN3-213ENST00000541953 SLC16A4O15374 487 aa16.94■□□□□ 0.3
CLSTN3-213ENST00000541953 LAMTOR5O43504 91 aa16.94■□□□□ 0.3
CLSTN3-213ENST00000541953 KCNE1P15382 129 aa16.94■□□□□ 0.3
CLSTN3-213ENST00000541953 SPAG1Q07617 926 aa16.94■□□□□ 0.3
CLSTN3-213ENST00000541953 RINT1Q6NUQ1 792 aa16.94■□□□□ 0.3
CLSTN3-213ENST00000541953 C1orf186Q6ZWK4 172 aa16.94■□□□□ 0.3
CLSTN3-213ENST00000541953 KIF2CQ99661 725 aa16.94■□□□□ 0.3
CLSTN3-213ENST00000541953 CCDC94Q9BW85 323 aaPredicted RBP16.94■□□□□ 0.3
CLSTN3-213ENST00000541953 MRPL4Q9BYD3 311 aaKnown RBP16.94■□□□□ 0.3
CLSTN3-213ENST00000541953 TMEM134Q9H6X4 195 aa16.94■□□□□ 0.3
CLSTN3-213ENST00000541953 CYP4F11Q9HBI6 524 aa16.94■□□□□ 0.3
CLSTN3-213ENST00000541953 CEP72Q9P209 647 aa16.94■□□□□ 0.3
CLSTN3-213ENST00000541953 CNTN3Q9P232 1028 aa16.94■□□□□ 0.3
CLSTN3-213ENST00000541953 LIMCH1Q9UPQ0 1083 aa16.94■□□□□ 0.3
CLSTN3-213ENST00000541953 MYH11P35749 1972 aa16.94■□□□□ 0.3
CLSTN3-213ENST00000541953 F5P12259 2224 aa16.94■□□□□ 0.3
CLSTN3-213ENST00000541953 TSC2P49815 1807 aa16.93■□□□□ 0.3
CLSTN3-213ENST00000541953 PRRG1O14668 218 aa16.93■□□□□ 0.3
CLSTN3-213ENST00000541953 KINO60870 393 aaKnown RBP16.93■□□□□ 0.3
CLSTN3-213ENST00000541953 LRG1P02750 347 aa16.93■□□□□ 0.3
CLSTN3-213ENST00000541953 ATF2P15336 505 aa16.93■□□□□ 0.3
CLSTN3-213ENST00000541953 YARSP54577 528 aaKnown RBP16.93■□□□□ 0.3
CLSTN3-213ENST00000541953 PFKPQ01813 784 aa16.93■□□□□ 0.3
CLSTN3-213ENST00000541953 SLC10A6Q3KNW5 377 aa16.93■□□□□ 0.3
CLSTN3-213ENST00000541953 MPZL3Q6UWV2 235 aa16.93■□□□□ 0.3
CLSTN3-213ENST00000541953 VITQ6UXI7 678 aa16.93■□□□□ 0.3
CLSTN3-213ENST00000541953 TCEAL8Q8IYN2 117 aa16.93■□□□□ 0.3
CLSTN3-213ENST00000541953 ZBTB44Q8NCP5 570 aa16.93■□□□□ 0.3
CLSTN3-213ENST00000541953 NELL1Q92832 810 aa16.93■□□□□ 0.3
CLSTN3-213ENST00000541953 ELSPBP1Q96BH3 223 aa16.93■□□□□ 0.3
CLSTN3-213ENST00000541953 RSPRY1Q96DX4 576 aa16.93■□□□□ 0.3
CLSTN3-213ENST00000541953 OSBPL6Q9BZF3 934 aa16.93■□□□□ 0.3
CLSTN3-213ENST00000541953 CRISPLD1Q9H336 500 aa16.93■□□□□ 0.3
CLSTN3-213ENST00000541953 KMT5AQ9NQR1 393 aa16.93■□□□□ 0.3
CLSTN3-213ENST00000541953 DLL3Q9NYJ7 618 aa16.93■□□□□ 0.3
CLSTN3-213ENST00000541953 GDE1Q9NZC3 331 aa16.93■□□□□ 0.3
CLSTN3-213ENST00000541953 FBXO4Q9UKT5 387 aa16.93■□□□□ 0.3
CLSTN3-213ENST00000541953 ANK1P16157 1881 aa16.93■□□□□ 0.3
CLSTN3-213ENST00000541953 SPTBN2O15020 2390 aa16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 TRAPPC3O43617 180 aa16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 OR4Q2P0C623 313 aa16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 MCF2P10911 925 aa16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 TDGF1P13385 188 aa16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 PTPN2P17706 415 aa16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 U2AF2P26368 475 aaKnown RBP eCLIP16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 VIPR2P41587 438 aa16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 TRAPPC10P48553 1259 aa16.92■□□□□ 0.3
CLSTN3-213ENST00000541953 GUCY2FP51841 1108 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms