RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 KLHL40Q2TBA0 621 aa13.07□□□□□ -0.32
CHD4-203ENST00000535717 DPCR1Q3MIW9 517 aa13.07□□□□□ -0.32
CHD4-203ENST00000535717 CEP135Q66GS9 1140 aa13.07□□□□□ -0.32
CHD4-203ENST00000535717 TTI2Q6NXR4 508 aa13.07□□□□□ -0.32
CHD4-203ENST00000535717 DCLRE1AQ6PJP8 1040 aa13.07□□□□□ -0.32
CHD4-203ENST00000535717 CD300LGQ6UXG3 332 aa13.07□□□□□ -0.32
CHD4-203ENST00000535717 ZC3H3Q8IXZ2 948 aaKnown RBP13.07□□□□□ -0.32
CHD4-203ENST00000535717 MLKLQ8NB16 471 aa13.07□□□□□ -0.32
CHD4-203ENST00000535717 C3orf58Q8NDZ4 430 aa13.07□□□□□ -0.32
CHD4-203ENST00000535717 BEST2Q8NFU1 509 aa13.07□□□□□ -0.32
CHD4-203ENST00000535717 PLEKHO2Q8TD55 490 aa13.07□□□□□ -0.32
CHD4-203ENST00000535717 POF1BQ8WVV4 589 aa13.07□□□□□ -0.32
CHD4-203ENST00000535717 CCDC127Q96BQ5 260 aa13.07□□□□□ -0.32
CHD4-203ENST00000535717 DDX27Q96GQ7 796 aaKnown RBP13.07□□□□□ -0.32
CHD4-203ENST00000535717 TMEM169Q96HH4 297 aa13.07□□□□□ -0.32
CHD4-203ENST00000535717 DUSP9Q99956 384 aaKnown RBP13.07□□□□□ -0.32
CHD4-203ENST00000535717 ADAM28Q9UKQ2 775 aa13.07□□□□□ -0.32
CHD4-203ENST00000535717 LZTS1Q9Y250 596 aa13.07□□□□□ -0.32
CHD4-203ENST00000535717 FRMD4BQ9Y2L6 1034 aa13.07□□□□□ -0.32
CHD4-203ENST00000535717 PTPRJQ12913 1337 aa13.07□□□□□ -0.32
CHD4-203ENST00000535717 TMEM189-UBE2V1I3L0A0 370 aa13.06□□□□□ -0.32
CHD4-203ENST00000535717 PODXLO00592 558 aa13.06□□□□□ -0.32
CHD4-203ENST00000535717 CETN3O15182 167 aa13.06□□□□□ -0.32
CHD4-203ENST00000535717 XPOTO43592 962 aaKnown RBP13.06□□□□□ -0.32
CHD4-203ENST00000535717 TADA2AO75478 443 aa13.06□□□□□ -0.32
CHD4-203ENST00000535717 B3GAT3O94766 335 aa13.06□□□□□ -0.32
CHD4-203ENST00000535717 EFEMP2O95967 443 aa13.06□□□□□ -0.32
CHD4-203ENST00000535717 LRPAP1P30533 357 aa13.06□□□□□ -0.32
CHD4-203ENST00000535717 STX17P56962 302 aa13.06□□□□□ -0.32
CHD4-203ENST00000535717 ERVFC1P60507 584 aa13.06□□□□□ -0.32
CHD4-203ENST00000535717 TFAMQ00059 246 aaKnown RBP13.06□□□□□ -0.32
CHD4-203ENST00000535717 FKBP3Q00688 224 aaKnown RBP13.06□□□□□ -0.32
CHD4-203ENST00000535717 PAK1Q13153 545 aa13.06□□□□□ -0.32
CHD4-203ENST00000535717 SURF1Q15526 300 aa13.06□□□□□ -0.32
CHD4-203ENST00000535717 LMBRD2Q68DH5 695 aaPredicted RBP13.06□□□□□ -0.32
CHD4-203ENST00000535717 FOXR2Q6PJQ5 311 aa13.06□□□□□ -0.32
CHD4-203ENST00000535717 TAS1R1Q7RTX1 841 aa13.06□□□□□ -0.32
CHD4-203ENST00000535717 DDX53Q86TM3 631 aaKnown RBP13.06□□□□□ -0.32
CHD4-203ENST00000535717 NT5DC4Q86YG4 428 aa13.06□□□□□ -0.32
CHD4-203ENST00000535717 OR5B17Q8NGF7 314 aa13.06□□□□□ -0.32
CHD4-203ENST00000535717 HASPINQ8TF76 798 aa13.06□□□□□ -0.32
CHD4-203ENST00000535717 MRPL38Q96DV4 380 aaKnown RBP13.06□□□□□ -0.32
CHD4-203ENST00000535717 MED15Q96RN5 788 aa13.06□□□□□ -0.32
CHD4-203ENST00000535717 GAS2L1Q99501 681 aaPredicted RBP13.06□□□□□ -0.32
CHD4-203ENST00000535717 POP1Q99575 1024 aaKnown RBP13.06□□□□□ -0.32
CHD4-203ENST00000535717 LMAN2LQ9H0V9 348 aa13.06□□□□□ -0.32
CHD4-203ENST00000535717 DPP3Q9NY33 737 aa13.06□□□□□ -0.32
CHD4-203ENST00000535717 PUF60Q9UHX1 559 aaKnown RBP13.06□□□□□ -0.32
CHD4-203ENST00000535717 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.06□□□□□ -0.32
CHD4-203ENST00000535717 MYO7AQ13402 2215 aa13.06□□□□□ -0.32
CHD4-203ENST00000535717 ANO9A1A5B4 782 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 BICDL2A1A5D9 508 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 PPEF2O14830 753 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 MAPK13O15264 365 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 CSPG5O95196 566 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 DLATP10515 647 aaKnown RBP13.05□□□□□ -0.32
CHD4-203ENST00000535717 POU3F3P20264 500 aaPredicted RBP13.05□□□□□ -0.32
CHD4-203ENST00000535717 IGFBP4P22692 258 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 IRS1P35568 1242 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 PSMC2P35998 433 aaKnown RBP13.05□□□□□ -0.32
CHD4-203ENST00000535717 NFKBIBQ15653 356 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 C9orf57Q5W0N0 161 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 SCARA3Q6AZY7 606 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 WDR49Q8IV35 697 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 FAM186BQ8IYM0 893 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 RNF168Q8IYW5 571 aaPredicted RBP13.05□□□□□ -0.32
CHD4-203ENST00000535717 VPS52Q8N1B4 723 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 PARD3BQ8TEW8 1205 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 CACTINQ8WUQ7 758 aaKnown RBP13.05□□□□□ -0.32
CHD4-203ENST00000535717 SYAP1Q96A49 352 aaPredicted RBP13.05□□□□□ -0.32
CHD4-203ENST00000535717 BORCS6Q96GS4 357 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 FNBP1Q96RU3 617 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 CGRRF1Q99675 332 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 GPR62Q9BZJ7 368 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 MTMR12Q9C0I1 747 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 TLR9Q9NR96 1032 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 INTS13Q9NVM9 706 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 LMCD1Q9NZU5 365 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 RWDD2AQ9UIY3 292 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 PCDHGC5Q9Y5F6 944 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 MTCH2Q9Y6C9 303 aa13.05□□□□□ -0.32
CHD4-203ENST00000535717 PRRC2BQ5JSZ5 2229 aaKnown RBP13.05□□□□□ -0.32
CHD4-203ENST00000535717 LRRIQ3A6PVS8 624 aaPredicted RBP13.04□□□□□ -0.32
CHD4-203ENST00000535717 FSCN2O14926 492 aa13.04□□□□□ -0.32
CHD4-203ENST00000535717 TMEM191BP0C7N4 346 aa13.04□□□□□ -0.32
CHD4-203ENST00000535717 TNNI1P19237 187 aa13.04□□□□□ -0.32
CHD4-203ENST00000535717 DLG4P78352 724 aa13.04□□□□□ -0.32
CHD4-203ENST00000535717 CLDN10P78369 228 aa13.04□□□□□ -0.32
CHD4-203ENST00000535717 PTPROQ16827 1216 aa13.04□□□□□ -0.32
CHD4-203ENST00000535717 DUOXA2Q1HG44 320 aa13.04□□□□□ -0.32
CHD4-203ENST00000535717 SKOR2Q2VWA4 1001 aaPredicted RBP13.04□□□□□ -0.32
CHD4-203ENST00000535717 C1orf220Q5T0J3 134 aa13.04□□□□□ -0.32
CHD4-203ENST00000535717 FUT10Q6P4F1 479 aa13.04□□□□□ -0.32
CHD4-203ENST00000535717 SASS6Q6UVJ0 657 aa13.04□□□□□ -0.32
CHD4-203ENST00000535717 C1orf127Q8N9H9 656 aa13.04□□□□□ -0.32
CHD4-203ENST00000535717 CXorf38Q8TB03 319 aa13.04□□□□□ -0.32
CHD4-203ENST00000535717 TMC2Q8TDI7 906 aa13.04□□□□□ -0.32
CHD4-203ENST00000535717 ZNF516Q92618 1163 aa13.04□□□□□ -0.32
CHD4-203ENST00000535717 B3GALT6Q96L58 329 aa13.04□□□□□ -0.32
CHD4-203ENST00000535717 TCF25Q9BQ70 676 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms