RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 PPP1R14DQ9NXH3 145 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 GALNT8Q9NY28 637 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 GABBR1Q9UBS5 961 aa5.97□□□□□ -1.45
CD44-236ENST00000533222 DDX20Q9UHI6 824 aaKnown RBP5.97□□□□□ -1.45
CD44-236ENST00000533222 BLMP54132 1417 aaPredicted RBP5.97□□□□□ -1.45
CD44-236ENST00000533222 FANCD2Q9BXW9 1451 aa5.96□□□□□ -1.45
CD44-236ENST00000533222 TONSLQ96HA7 1378 aa5.96□□□□□ -1.45
CD44-236ENST00000533222 ZC3H12DA2A288 527 aaKnown RBP5.96□□□□□ -1.46
CD44-236ENST00000533222 MCF2LO15068 1137 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 NVLO15381 856 aaKnown RBP5.96□□□□□ -1.46
CD44-236ENST00000533222 SULT1B1O43704 296 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 STRNO43815 780 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 BUB1BO60566 1050 aaPredicted RBP5.96□□□□□ -1.46
CD44-236ENST00000533222 ZNF254O75437 659 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 DAB1O75553 588 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 TCEA3O75764 348 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 IDEP14735 1019 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 JUNBP17275 347 aaPredicted RBP5.96□□□□□ -1.46
CD44-236ENST00000533222 GRK2P25098 689 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 ALDH3A1P30838 453 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 HOXC13P31276 330 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 PRKAR1BP31321 381 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 GRK3P35626 688 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 PDE6BP35913 854 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 ACADSBP45954 432 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 BLVRAP53004 296 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 ERVFRD-1P60508 538 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 B2MP61769 119 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 GUCY1A3Q02108 690 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 CYP4A11Q02928 519 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 LSAMPQ13449 338 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 ZNF460Q14592 562 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 PPP1R7Q15435 360 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 PROSER3Q2NL68 480 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 CYP4A22Q5TCH4 519 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 THEMIS2Q5TEJ8 643 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 MEX3CQ5U5Q3 659 aaKnown RBP5.96□□□□□ -1.46
CD44-236ENST00000533222 TBC1D9BQ66K14 1250 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 MPZL3Q6UWV2 235 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 RPTNQ6XPR3 784 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 DCLK2Q8N568 766 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 STKLD1Q8NE28 680 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 DEPTORQ8TB45 409 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.96□□□□□ -1.46
CD44-236ENST00000533222 SPATA18Q8TC71 538 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 RPGRQ92834 1020 aaKnown RBP5.96□□□□□ -1.46
CD44-236ENST00000533222 NRBF2Q96F24 287 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 TMEM169Q96HH4 297 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 SAMD11Q96NU1 681 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 HNRNPABQ99729 332 aaKnown RBP5.96□□□□□ -1.46
CD44-236ENST00000533222 SIL1Q9H173 461 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 VPS16Q9H269 839 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 BCAS3Q9H6U6 928 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.96□□□□□ -1.46
CD44-236ENST00000533222 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.96□□□□□ -1.46
CD44-236ENST00000533222 SLC45A1Q9Y2W3 748 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 FADS3Q9Y5Q0 445 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 ERBINQ96RT1 1412 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 LAMC1P11047 1609 aa5.96□□□□□ -1.46
CD44-236ENST00000533222 POLR3AO14802 1390 aaPredicted RBP5.95□□□□□ -1.46
CD44-236ENST00000533222 KIF24Q5T7B8 1368 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 CCDC163A0A0D9SF12 145 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 A0A1W2PQJ5 194 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 LRRD1A4D1F6 860 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 E7ENQ6 273 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 AQP7O14520 342 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 IRS4O14654 1257 aaPredicted RBP5.95□□□□□ -1.46
CD44-236ENST00000533222 SLC26A4O43511 780 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 FLOT1O75955 427 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 SOD2P04179 222 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 RHOXF2BP0C7M4 288 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 KRT4P19013 534 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 M6PRP20645 277 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 SYT1P21579 422 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 TMF1P82094 1093 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 RUNX1T1Q06455 604 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 ACTN3Q08043 901 aaPredicted RBP5.95□□□□□ -1.46
CD44-236ENST00000533222 STK3Q13188 491 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 MSLNQ13421 630 aaPredicted RBP5.95□□□□□ -1.46
CD44-236ENST00000533222 TCEA2Q15560 299 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 C20orf194Q5TEA3 1177 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 KIAA1841Q6NSI8 718 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 ABHD17CQ6PCB6 329 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 ABRAXAS1Q6UWZ7 409 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 CWC27Q6UX04 472 aaKnown RBP5.95□□□□□ -1.46
CD44-236ENST00000533222 ARHGEF18Q6ZSZ5 1173 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 USP51Q70EK9 711 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 KRT28Q7Z3Y7 464 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 KIAA0907Q7Z7F0 614 aaPredicted RBP5.95□□□□□ -1.46
CD44-236ENST00000533222 ZNF554Q86TJ5 538 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 CCAR2Q8N163 923 aaKnown RBP5.95□□□□□ -1.46
CD44-236ENST00000533222 NGDNQ8NEJ9 315 aaKnown RBP5.95□□□□□ -1.46
CD44-236ENST00000533222 TBC1D31Q96DN5 1066 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 TRMT2BQ96GJ1 504 aaKnown RBP5.95□□□□□ -1.46
CD44-236ENST00000533222 MOGAT1Q96PD6 335 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 KCNJ15Q99712 375 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 ZFYVE21Q9BQ24 234 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 RHOXF2Q9BQY4 288 aa5.95□□□□□ -1.46
CD44-236ENST00000533222 NSRP1Q9H0G5 558 aaKnown RBP5.95□□□□□ -1.46
CD44-236ENST00000533222 SLC6A17Q9H1V8 727 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms