RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), human

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-233	ENST00000531141	NHLH2	Q02577	135 aa		4.89	□□□□□ -1.63
CD44-233	ENST00000531141	UBXN2B	Q14CS0	331 aa		4.89	□□□□□ -1.63
CD44-233	ENST00000531141	GFOD2	Q3B7J2	385 aa		4.89	□□□□□ -1.63
CD44-233	ENST00000531141	NRN1L	Q496H8	165 aa		4.89	□□□□□ -1.63
CD44-233	ENST00000531141	KHDC1	Q4VXA5	237 aa	Known RBP	4.89	□□□□□ -1.63
CD44-233	ENST00000531141	CCDC157	Q569K6	752 aa		4.89	□□□□□ -1.63
CD44-233	ENST00000531141	ZNF365	Q70YC5	407 aa		4.89	□□□□□ -1.63
CD44-233	ENST00000531141	HEATR3	Q7Z4Q2	680 aa		4.89	□□□□□ -1.63
CD44-233	ENST00000531141	C1orf210	Q8IVY1	113 aa		4.89	□□□□□ -1.63
CD44-233	ENST00000531141	ZBTB34	Q8NCN2	500 aa		4.89	□□□□□ -1.63
CD44-233	ENST00000531141	IL17RD	Q8NFM7	739 aa		4.89	□□□□□ -1.63
CD44-233	ENST00000531141	IL17D	Q8TAD2	202 aa		4.89	□□□□□ -1.63
CD44-233	ENST00000531141	GPR20	Q99678	358 aa		4.89	□□□□□ -1.63
CD44-233	ENST00000531141	VRK1	Q99986	396 aa	Predicted RBP	4.89	□□□□□ -1.63
CD44-233	ENST00000531141	C1orf112	Q9NSG2	853 aa		4.89	□□□□□ -1.63
CD44-233	ENST00000531141	JKAMP	Q9P055	326 aa		4.89	□□□□□ -1.63
CD44-233	ENST00000531141	CEP72	Q9P209	647 aa		4.89	□□□□□ -1.63
CD44-233	ENST00000531141	ABCF2	Q9UG63	623 aa		4.89	□□□□□ -1.63
CD44-233	ENST00000531141	SORCS3	Q9UPU3	1222 aa		4.89	□□□□□ -1.63
CD44-233	ENST00000531141	CHST2	Q9Y4C5	530 aa		4.89	□□□□□ -1.63
CD44-233	ENST00000531141	NR2E3	Q9Y5X4	410 aa		4.89	□□□□□ -1.63
CD44-233	ENST00000531141	XDH	P47989	1333 aa		4.89	□□□□□ -1.63
CD44-233	ENST00000531141	TCRBV7S2A1N4T	A0A589	114 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	CDHR4	A6H8M9	788 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	DRGX	A6NNA5	263 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	FAM227A	F5H4B4	570 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	LEFTY2	O00292	366 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	B3GALT2	O43825	422 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	PPFIA4	O75335	1185 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	PEX11B	O96011	259 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	ALDH2	P05091	517 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	GNAI3	P08754	354 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	GCSH	P23434	173 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	KRTAP10-2	P60368	255 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	GNAI1	P63096	354 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	SNAPC2	Q13487	334 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	FAM102A	Q5T9C2	384 aa	Predicted RBP	4.88	□□□□□ -1.63
CD44-233	ENST00000531141	AGAP9	Q5VTM2	703 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	MED25	Q71SY5	747 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	GDF7	Q7Z4P5	450 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	WDR75	Q8IWA0	830 aa	Known RBP	4.88	□□□□□ -1.63
CD44-233	ENST00000531141	RHOT2	Q8IXI1	618 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	FITM2	Q8N6M3	262 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	CPT1C	Q8TCG5	803 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	4.88	□□□□□ -1.63
CD44-233	ENST00000531141	CACTIN	Q8WUQ7	758 aa	Known RBP	4.88	□□□□□ -1.63
CD44-233	ENST00000531141	EXTL1	Q92935	676 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	CGRRF1	Q99675	332 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	ACO2	Q99798	780 aa	Known RBP	4.88	□□□□□ -1.63
CD44-233	ENST00000531141	SLC46A2	Q9BY10	475 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	RLIM	Q9NVW2	624 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	GABBR1	Q9UBS5	961 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	PCDHA3	Q9Y5H8	950 aa		4.88	□□□□□ -1.63
CD44-233	ENST00000531141	GAGE12B	A1L429	117 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	GAGE12H	A6NDE8	117 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	VSTM5	A8MXK1	200 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	F2RL2	O00254	374 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	SLC43A1	O75387	559 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	UBXN7	O94888	489 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	SCAF4	O95104	1147 aa	Known RBP	4.87	□□□□□ -1.63
CD44-233	ENST00000531141	ANXA1	P04083	346 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	TYR	P14679	529 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	HTR1B	P28222	390 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	PRDX5	P30044	214 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	SLC6A4	P31645	630 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	PIK3CG	P48736	1102 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	RNASE9	P60153	205 aa	Known RBP	4.87	□□□□□ -1.63
CD44-233	ENST00000531141	FLYWCH1	Q4VC44	716 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	HSP90AB2P	Q58FF8	381 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	AOPEP	Q8N6M6	819 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	OR56A1	Q8NGH5	318 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	TTC8	Q8TAM2	541 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	KLHDC4	Q8TBB5	520 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	BRIX1	Q8TDN6	353 aa	Known RBP	4.87	□□□□□ -1.63
CD44-233	ENST00000531141	NUP133	Q8WUM0	1156 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	SLC35A4	Q96G79	324 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	C8orf48	Q96LL4	319 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	NEU1	Q99519	415 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	PCGF6	Q9BYE7	350 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	RNPEP	Q9H4A4	650 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	PRDM11	Q9NQV5	511 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	CFAP97	Q9P2B7	532 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	MYRF	Q9Y2G1	1151 aa		4.87	□□□□□ -1.63
CD44-233	ENST00000531141	CTNND1	O60716	968 aa	Known RBP	4.86	□□□□□ -1.63
CD44-233	ENST00000531141	TUSC2	O75896	110 aa		4.86	□□□□□ -1.63
CD44-233	ENST00000531141	SBK3	P0C264	359 aa		4.86	□□□□□ -1.63
CD44-233	ENST00000531141	SLC6A2	P23975	617 aa		4.86	□□□□□ -1.63
CD44-233	ENST00000531141	RAB1A	P62820	205 aa		4.86	□□□□□ -1.63
CD44-233	ENST00000531141	NKX6-1	P78426	367 aa	Predicted RBP	4.86	□□□□□ -1.63
CD44-233	ENST00000531141	GBX1	Q14549	363 aa		4.86	□□□□□ -1.63
CD44-233	ENST00000531141	ARHGAP29	Q52LW3	1261 aa		4.86	□□□□□ -1.63
CD44-233	ENST00000531141	CCDC93	Q567U6	631 aa		4.86	□□□□□ -1.63
CD44-233	ENST00000531141	MIIP	Q5JXC2	388 aa		4.86	□□□□□ -1.63
CD44-233	ENST00000531141	METRNL	Q641Q3	311 aa		4.86	□□□□□ -1.63
CD44-233	ENST00000531141	OVCH2	Q7RTZ1	564 aa		4.86	□□□□□ -1.63
CD44-233	ENST00000531141	DAAM2	Q86T65	1068 aa		4.86	□□□□□ -1.63
CD44-233	ENST00000531141	FAM90A1	Q86YD7	464 aa		4.86	□□□□□ -1.63
CD44-233	ENST00000531141	PDSS2	Q86YH6	399 aa		4.86	□□□□□ -1.63
CD44-233	ENST00000531141	ZFPM1	Q8IX07	1006 aa		4.86	□□□□□ -1.63
CD44-233	ENST00000531141	PPP1R35	Q8TAP8	253 aa		4.86	□□□□□ -1.63

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