RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 WDR4P57081 412 aaKnown RBP15.11■□□□□ 0.01
USP48-213ENST00000529637 ROR2Q01974 943 aaKnown RBP15.11■□□□□ 0.01
USP48-213ENST00000529637 IL31RAQ8NI17 732 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 C1orf54Q8WWF1 131 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 SPIRE2Q8WWL2 714 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 ZSWIM1Q9BR11 485 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 ACP6Q9NPH0 428 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 LRRC37AA6NMS7 1700 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 SPDYE2BA6NHP3 402 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 SMAPO00193 183 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 NFIBO00712 420 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 NPM3O75607 178 aaKnown RBP15.11■□□□□ 0.01
USP48-213ENST00000529637 SPDYE6P0CI01 402 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 ITGB5P18084 799 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 SKIV2L2P42285 1042 aaKnown RBP15.11■□□□□ 0.01
USP48-213ENST00000529637 VAMP7P51809 220 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 PEX3P56589 373 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 SIX1Q15475 284 aaPredicted RBP15.11■□□□□ 0.01
USP48-213ENST00000529637 SLC15A2Q16348 729 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 INTS8Q75QN2 995 aaKnown RBP15.11■□□□□ 0.01
USP48-213ENST00000529637 CROCCP2Q86T23 111 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 LMNTD2Q8IXW0 634 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 GALNT15Q8N3T1 639 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 FLAD1Q8NFF5 587 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 KAT5Q92993 513 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 SERPINB12Q96P63 405 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 FIZ1Q96SL8 496 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 AGPAT1Q99943 283 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 ZNF341Q9BYN7 854 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 GPRC5CQ9NQ84 441 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.11■□□□□ 0.016e-6■■■■□ 22.5
USP48-213ENST00000529637 PARP2Q9UGN5 583 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 SYNGAP1Q96PV0 1343 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 SLC16A4O15374 487 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 FKBP1AP62942 108 aaKnown RBP15.11■□□□□ 0.01
USP48-213ENST00000529637 MRPS35P82673 323 aaKnown RBP15.11■□□□□ 0.01
USP48-213ENST00000529637 RFWD3Q6PCD5 774 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 ARHGEF19Q8IW93 802 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 MFN1Q8IWA4 741 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 RPUSD2Q8IZ73 545 aaKnown RBP15.11■□□□□ 0.01
USP48-213ENST00000529637 ZSWIM2Q8NEG5 633 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 DNAJC9Q8WXX5 260 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 MAGEB18Q96M61 343 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 MXRA8Q9BRK3 442 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 NUMBLQ9Y6R0 609 aa15.11■□□□□ 0.01
USP48-213ENST00000529637 ANKRD62A6NC57 917 aa15.1■□□□□ 0.01
USP48-213ENST00000529637 SPAG7O75391 227 aa15.1■□□□□ 0.01
USP48-213ENST00000529637 NPTXRO95502 500 aa15.1■□□□□ 0.01
USP48-213ENST00000529637 DLATP10515 647 aaKnown RBP15.1■□□□□ 0.01
USP48-213ENST00000529637 POLE2P56282 527 aa15.1■□□□□ 0.01
USP48-213ENST00000529637 SP4Q02446 784 aa15.1■□□□□ 0.01
USP48-213ENST00000529637 KLC1Q07866 573 aa15.1■□□□□ 0.01
USP48-213ENST00000529637 PPP3CAQ08209 521 aa15.1■□□□□ 0.01
USP48-213ENST00000529637 FAM102BQ5T8I3 360 aa15.1■□□□□ 0.01
USP48-213ENST00000529637 DAW1Q8N136 415 aa15.1■□□□□ 0.01
USP48-213ENST00000529637 AKT1S1Q96B36 256 aa15.1■□□□□ 0.01
USP48-213ENST00000529637 ADAM33Q9BZ11 813 aa15.1■□□□□ 0.01
USP48-213ENST00000529637 RANBP17Q9H2T7 1088 aaKnown RBP15.1■□□□□ 0.01
USP48-213ENST00000529637 ZNF277Q9NRM2 450 aaPredicted RBP15.1■□□□□ 0.01
USP48-213ENST00000529637 METTL5Q9NRN9 209 aaKnown RBP15.1■□□□□ 0.01
USP48-213ENST00000529637 TXLNGQ9NUQ3 528 aa15.1■□□□□ 0.01
USP48-213ENST00000529637 NAALADL1Q9UQQ1 740 aa15.1■□□□□ 0.01
USP48-213ENST00000529637 VPS41P49754 854 aa15.1■□□□□ 0.01
USP48-213ENST00000529637 PARP6Q2NL67 630 aa15.1■□□□□ 0.01
USP48-213ENST00000529637 KHDC1Q4VXA5 237 aaKnown RBP15.1■□□□□ 0.01
USP48-213ENST00000529637 STYK1Q6J9G0 422 aa15.1■□□□□ 0.01
USP48-213ENST00000529637 FAM151AQ8WW52 585 aa15.1■□□□□ 0.01
USP48-213ENST00000529637 RUNDC3BQ96NL0 473 aa15.1■□□□□ 0.01
USP48-213ENST00000529637 ACCSQ96QU6 501 aa15.1■□□□□ 0.01
USP48-213ENST00000529637 WDR35Q9P2L0 1181 aa15.1■□□□□ 0.01
USP48-213ENST00000529637 ZHX2Q9Y6X8 837 aa15.1■□□□□ 0.01
USP48-213ENST00000529637 MYH11P35749 1972 aa15.1■□□□□ 0.01
USP48-213ENST00000529637 ATRNL1Q5VV63 1379 aa15.1■□□□□ 0.01
USP48-213ENST00000529637 GREB1LQ9C091 1923 aaPredicted RBP15.1■□□□□ 0.01
USP48-213ENST00000529637 MXI1P50539 228 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 POLGP54098 1239 aaPredicted RBP15.09■□□□□ 0.01
USP48-213ENST00000529637 CALCOCO2Q13137 446 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 SLC5A9Q2M3M2 681 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 OR52E8Q6IFG1 317 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 TRMT10CQ7L0Y3 403 aaKnown RBP15.09■□□□□ 0.01
USP48-213ENST00000529637 ATG4AQ8WYN0 398 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 LRRC37BQ96QE4 947 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 NMRK1Q9NWW6 199 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 KIF13BQ9NQT8 1826 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 ATP8B3O60423 1300 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 SPOPO43791 374 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 PYGLP06737 847 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 P4HBP07237 508 aaKnown RBP15.09■□□□□ 0.01
USP48-213ENST00000529637 FAM160B2Q86V87 743 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.09■□□□□ 0.015e-6■■■■■ 55.7
USP48-213ENST00000529637 XXYLT1Q8NBI6 393 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 FAM136AQ96C01 138 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 RAVER2Q9HCJ3 691 aaKnown RBP15.09■□□□□ 0.01
USP48-213ENST00000529637 DMAC2Q9NW81 257 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 GRID1Q9ULK0 1009 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 TTC4O95801 387 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 DGKZQ13574 1117 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 MUM1Q2TAK8 710 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 XKR9Q5GH70 373 aa15.09■□□□□ 0.01
USP48-213ENST00000529637 PLA2G4FQ68DD2 849 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms