RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 EMC10Q5UCC4 262 aa8.93□□□□□ -0.98
LSM1-202ENST00000520286 KLHDC7AQ5VTJ3 777 aa8.93□□□□□ -0.98
LSM1-202ENST00000520286 TMED8Q6PL24 325 aaPredicted RBP8.93□□□□□ -0.98
LSM1-202ENST00000520286 ZNF354CQ86Y25 554 aa8.93□□□□□ -0.98
LSM1-202ENST00000520286 OR6B3Q8NGW1 331 aa8.93□□□□□ -0.98
LSM1-202ENST00000520286 CCT6BQ92526 530 aa8.93□□□□□ -0.98
LSM1-202ENST00000520286 RPL10LQ96L21 214 aaKnown RBP8.93□□□□□ -0.98
LSM1-202ENST00000520286 BARX1Q9HBU1 254 aaPredicted RBP8.93□□□□□ -0.98
LSM1-202ENST00000520286 SLAMF7Q9NQ25 335 aa8.93□□□□□ -0.98
LSM1-202ENST00000520286 COL20A1Q9P218 1284 aa8.93□□□□□ -0.98
LSM1-202ENST00000520286 ATRNL1Q5VV63 1379 aa8.93□□□□□ -0.98
LSM1-202ENST00000520286 HMGXB3Q12766 1538 aa8.92□□□□□ -0.98
LSM1-202ENST00000520286 ZMYM3Q14202 1370 aa8.92□□□□□ -0.98
LSM1-202ENST00000520286 ADAMTS3O15072 1205 aa8.92□□□□□ -0.98
LSM1-202ENST00000520286 GRM6O15303 877 aa8.92□□□□□ -0.98
LSM1-202ENST00000520286 MATN4O95460 622 aa8.92□□□□□ -0.98
LSM1-202ENST00000520286 HARSP12081 509 aaKnown RBP8.92□□□□□ -0.98
LSM1-202ENST00000520286 KCNJ5P48544 419 aa8.92□□□□□ -0.98
LSM1-202ENST00000520286 ARFIP2P53365 341 aa8.92□□□□□ -0.98
LSM1-202ENST00000520286 RALBP1Q15311 655 aa8.92□□□□□ -0.98
LSM1-202ENST00000520286 ARL13BQ3SXY8 428 aa8.92□□□□□ -0.98
LSM1-202ENST00000520286 PABPC1LQ4VXU2 614 aaKnown RBP8.92□□□□□ -0.98
LSM1-202ENST00000520286 FAM47AQ5JRC9 791 aa8.92□□□□□ -0.98
LSM1-202ENST00000520286 CNKSR3Q6P9H4 555 aa8.92□□□□□ -0.98
LSM1-202ENST00000520286 SYTL1Q8IYJ3 562 aa8.92□□□□□ -0.98
LSM1-202ENST00000520286 OR14K1Q8NGZ2 314 aa8.92□□□□□ -0.98
LSM1-202ENST00000520286 ZSCAN18Q8TBC5 510 aaPredicted RBP8.92□□□□□ -0.98
LSM1-202ENST00000520286 PNISRQ8TF01 805 aaKnown RBP8.92□□□□□ -0.98
LSM1-202ENST00000520286 ATXN2LQ8WWM7 1075 aaKnown RBP8.92□□□□□ -0.98
LSM1-202ENST00000520286 NMD3Q96D46 503 aaKnown RBP8.92□□□□□ -0.98
LSM1-202ENST00000520286 PWWP2AQ96N64 755 aa8.92□□□□□ -0.98
LSM1-202ENST00000520286 BRIP1Q9BX63 1249 aa8.92□□□□□ -0.98
LSM1-202ENST00000520286 ADAM7Q9H2U9 754 aa8.92□□□□□ -0.98
LSM1-202ENST00000520286 JADE2Q9NQC1 790 aa8.92□□□□□ -0.98
LSM1-202ENST00000520286 NCDNQ9UBB6 729 aa8.92□□□□□ -0.98
LSM1-202ENST00000520286 ADAM29Q9UKF5 820 aa8.92□□□□□ -0.98
LSM1-202ENST00000520286 ZDHHC8Q9ULC8 765 aa8.92□□□□□ -0.98
LSM1-202ENST00000520286 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.92□□□□□ -0.98
LSM1-202ENST00000520286 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.92□□□□□ -0.98
LSM1-202ENST00000520286 SASH1O94885 1247 aa8.91□□□□□ -0.98
LSM1-202ENST00000520286 GNAI3P08754 354 aa8.91□□□□□ -0.98
LSM1-202ENST00000520286 SBK3P0C264 359 aa8.91□□□□□ -0.98
LSM1-202ENST00000520286 PHKA1P46020 1223 aa8.91□□□□□ -0.98
LSM1-202ENST00000520286 GNAI1P63096 354 aa8.91□□□□□ -0.98
LSM1-202ENST00000520286 APBA1Q02410 837 aa8.91□□□□□ -0.98
LSM1-202ENST00000520286 STARD3Q14849 445 aa8.91□□□□□ -0.98
LSM1-202ENST00000520286 ELF2Q15723 593 aa8.91□□□□□ -0.98
LSM1-202ENST00000520286 TBR1Q16650 682 aa8.91□□□□□ -0.98
LSM1-202ENST00000520286 CCDC93Q567U6 631 aa8.91□□□□□ -0.98
LSM1-202ENST00000520286 MFSD14BQ5SR56 506 aa8.91□□□□□ -0.98
LSM1-202ENST00000520286 MCTP2Q6DN12 878 aa8.91□□□□□ -0.98
LSM1-202ENST00000520286 ZNF783Q6ZMS7 281 aa8.91□□□□□ -0.98
LSM1-202ENST00000520286 CMTM4Q8IZR5 234 aa8.91□□□□□ -0.98
LSM1-202ENST00000520286 KLHL36Q8N4N3 616 aa8.91□□□□□ -0.98
LSM1-202ENST00000520286 ATP11CQ8NB49 1132 aa8.91□□□□□ -0.98
LSM1-202ENST00000520286 OR10H5Q8NGA6 315 aa8.91□□□□□ -0.98
LSM1-202ENST00000520286 CEP95Q96GE4 821 aa8.91□□□□□ -0.98
LSM1-202ENST00000520286 TMEM41AQ96HV5 264 aa8.91□□□□□ -0.98
LSM1-202ENST00000520286 DPH1Q9BZG8 443 aa8.91□□□□□ -0.98
LSM1-202ENST00000520286 MAGED2Q9UNF1 606 aaPredicted RBP8.91□□□□□ -0.98
LSM1-202ENST00000520286 MED16Q9Y2X0 877 aa8.91□□□□□ -0.98
LSM1-202ENST00000520286 ZDHHC9Q9Y397 364 aa8.91□□□□□ -0.98
LSM1-202ENST00000520286 CEP83Q9Y592 693 aa8.91□□□□□ -0.98
LSM1-202ENST00000520286 SMARCA2P51531 1590 aa8.9□□□□□ -0.98
LSM1-202ENST00000520286 A0A1W2PPC4 97 aa8.9□□□□□ -0.98
LSM1-202ENST00000520286 BTN3A1O00481 513 aa8.9□□□□□ -0.98
LSM1-202ENST00000520286 TBC1D4O60343 1298 aa8.9□□□□□ -0.98
LSM1-202ENST00000520286 WDHD1O75717 1129 aaPredicted RBP8.9□□□□□ -0.98
LSM1-202ENST00000520286 MTHFD1P11586 935 aaKnown RBP8.9□□□□□ -0.98
LSM1-202ENST00000520286 GRK6P43250 576 aa8.9□□□□□ -0.98
LSM1-202ENST00000520286 HSPA7P48741 367 aa8.9□□□□□ -0.98
LSM1-202ENST00000520286 RPS16P62249 146 aaKnown RBP8.9□□□□□ -0.98
LSM1-202ENST00000520286 ADAM8P78325 824 aa8.9□□□□□ -0.98
LSM1-202ENST00000520286 PTH1RQ03431 593 aa8.9□□□□□ -0.98
LSM1-202ENST00000520286 ICA1Q05084 483 aa8.9□□□□□ -0.98
LSM1-202ENST00000520286 POU5F1BQ06416 359 aa8.9□□□□□ -0.98
LSM1-202ENST00000520286 MPEG1Q2M385 716 aa8.9□□□□□ -0.98
LSM1-202ENST00000520286 OTUD7BQ6GQQ9 843 aa8.9□□□□□ -0.98
LSM1-202ENST00000520286 PGBD2Q6P3X8 592 aa8.9□□□□□ -0.98
LSM1-202ENST00000520286 SPATA5Q8NB90 893 aa8.9□□□□□ -0.98
LSM1-202ENST00000520286 GIMAP8Q8ND71 665 aaPredicted RBP8.9□□□□□ -0.98
LSM1-202ENST00000520286 IL17RDQ8NFM7 739 aa8.9□□□□□ -0.98
LSM1-202ENST00000520286 NAP1L4Q99733 375 aaKnown RBP8.9□□□□□ -0.98
LSM1-202ENST00000520286 MYOCQ99972 504 aa8.9□□□□□ -0.98
LSM1-202ENST00000520286 TTLL2Q9BWV7 592 aa8.9□□□□□ -0.98
LSM1-202ENST00000520286 SRRDQ9UH36 339 aa8.9□□□□□ -0.98
LSM1-202ENST00000520286 TRIM43BA6NCK2 446 aa8.89□□□□□ -0.99
LSM1-202ENST00000520286 SARSP49591 514 aaKnown RBP8.89□□□□□ -0.99
LSM1-202ENST00000520286 GZMKP49863 264 aa8.89□□□□□ -0.99
LSM1-202ENST00000520286 RENBPP51606 427 aa8.89□□□□□ -0.99
LSM1-202ENST00000520286 NOMO3P69849 1222 aa8.89□□□□□ -0.99
LSM1-202ENST00000520286 HTRA4P83105 476 aaPredicted RBP8.89□□□□□ -0.99
LSM1-202ENST00000520286 HGFACQ04756 655 aa8.89□□□□□ -0.99
LSM1-202ENST00000520286 SLC13A2Q13183 592 aa8.89□□□□□ -0.99
LSM1-202ENST00000520286 BIRC3Q13489 604 aa8.89□□□□□ -0.99
LSM1-202ENST00000520286 HABP2Q14520 560 aaPredicted RBP8.89□□□□□ -0.99
LSM1-202ENST00000520286 SLC35G1Q2M3R5 365 aa8.89□□□□□ -0.99
LSM1-202ENST00000520286 VWA3BQ502W6 1294 aa8.89□□□□□ -0.99
LSM1-202ENST00000520286 CCDC38Q502W7 563 aa8.89□□□□□ -0.99
LSM1-202ENST00000520286 TLDC1Q6P9B6 456 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms