RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 MUM1L1Q5H9M0 696 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 BEST2Q8NFU1 509 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 ERP27Q96DN0 273 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 AGAP3Q96P47 875 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 CHMP2BQ9UQN3 213 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 SNX9Q9Y5X1 595 aa13.39□□□□□ -0.27
USP53-209ENST00000514665 CCDC78A2IDD5 438 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 BNIP3LO60238 219 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 CST8O60676 142 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 SGPL1O95470 568 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 MYCP01106 439 aaPredicted RBP13.38□□□□□ -0.27
USP53-209ENST00000514665 TXNP10599 105 aaKnown RBP13.38□□□□□ -0.27
USP53-209ENST00000514665 KPNA2P52292 529 aaKnown RBP13.38□□□□□ -0.27
USP53-209ENST00000514665 KDSRQ06136 332 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 MAPK7Q13164 816 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 HSP90AA5PQ58FG0 334 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 MDH1BQ5I0G3 518 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 DTX3LQ8TDB6 740 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 LPAR1Q92633 364 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 UNC45AQ9H3U1 944 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 INTS13Q9NVM9 706 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 SLC12A6Q9UHW9 1150 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 GOLGA8QA0A0J9YX86 632 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 GOLGA8OA6NCC3 632 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 GOLGA8NF8WBI6 632 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 RBP3P10745 1247 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 ITGA4P13612 1032 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 COILP38432 576 aaPredicted RBP13.38□□□□□ -0.27
USP53-209ENST00000514665 MAGEA4P43358 317 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 CORO7P57737 925 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 ACTR2P61160 394 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 EN1Q05925 392 aaPredicted RBP13.38□□□□□ -0.27
USP53-209ENST00000514665 RCOR2Q8IZ40 523 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 LRRC71Q8N4P6 559 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 GRAMD1AQ96CP6 724 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 RIOX1Q9H6W3 641 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 DDTLA6NHG4 134 aaPredicted RBP13.38□□□□□ -0.27
USP53-209ENST00000514665 COPS2P61201 443 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 EMC2Q15006 297 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 TRPM8Q7Z2W7 1104 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 LCA5Q86VQ0 697 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 MYCBPAPQ8TBZ2 947 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 PNMA5Q96PV4 448 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 SERPINI1Q99574 410 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 GTSE1Q9NYZ3 720 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 GTF3C4Q9UKN8 822 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 STAP1Q9ULZ2 295 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 SLIT1O75093 1534 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 ITSN1Q15811 1721 aa13.38□□□□□ -0.27
USP53-209ENST00000514665 FAM47DPA6NHR8 397 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 TTC36A6NLP5 189 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 ATP9BO43861 1147 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 LCP1P13796 627 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 PRLRP16471 622 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 HABP4Q5JVS0 413 aaKnown RBP13.37□□□□□ -0.27
USP53-209ENST00000514665 PABPC3Q9H361 631 aaKnown RBP13.37□□□□□ -0.27
USP53-209ENST00000514665 SENP1Q9P0U3 644 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 SPATA31A5Q5VU36 1347 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 SPATA31A7Q8IWB4 1347 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 CDK17Q00537 523 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 KCNK18Q7Z418 384 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 MICALL2Q8IY33 904 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 VGLL2Q8N8G2 317 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 POP1Q99575 1024 aaKnown RBP13.37□□□□□ -0.27
USP53-209ENST00000514665 NCAPGQ9BPX3 1015 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 TIPINQ9BVW5 301 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 CNOT7Q9UIV1 285 aaKnown RBP13.37□□□□□ -0.27
USP53-209ENST00000514665 GTF2H1P32780 548 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 DNAJC3Q13217 504 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 RABGAP1LQ5R372 815 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 KIAA1841Q6NSI8 718 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 GPAT2Q6NUI2 795 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 RNF135Q8IUD6 432 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 ZSWIM1Q9BR11 485 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 TLR10Q9BXR5 811 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 ANLNQ9NQW6 1124 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 ZFATQ9P243 1243 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 MOCS2O96007 188 aaPredicted RBP13.37□□□□□ -0.27
USP53-209ENST00000514665 SATB1Q01826 763 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 TMTC4Q5T4D3 741 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 C3orf62Q6ZUJ4 267 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 TEX2Q8IWB9 1127 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 EPS8L3Q8TE67 593 aaKnown RBP13.37□□□□□ -0.27
USP53-209ENST00000514665 SEPT1Q8WYJ6 367 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 MOV10L1Q9BXT6 1211 aaKnown RBP13.37□□□□□ -0.27
USP53-209ENST00000514665 OSBPL1AQ9BXW6 950 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 PNMA3Q9UL41 463 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 VWDEQ8N2E2 1590 aa13.37□□□□□ -0.27
USP53-209ENST00000514665 CLGNO14967 610 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 RGS9BPQ6ZS82 235 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 LRRC34Q8IZ02 419 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 GLIS3Q8NEA6 775 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 SLC20A1Q8WUM9 679 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 FSD1LQ9BXM9 530 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 ZNF446Q9NWS9 450 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 ZC3H7BQ9UGR2 993 aaKnown RBP13.36□□□□□ -0.27
USP53-209ENST00000514665 PPLO60437 1756 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 TMEM131LA2VDJ0 1609 aa13.36□□□□□ -0.27
USP53-209ENST00000514665 ARHGEF28Q8N1W1 1705 aaKnown RBP13.36□□□□□ -0.27
USP53-209ENST00000514665 CCT8L1PA6NM43 557 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms