RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 GAD1Q99259 594 aa10.91□□□□□ -0.66
NUP54-203ENST00000504173 FAM213AQ9BRX8 229 aa10.91□□□□□ -0.66
NUP54-203ENST00000504173 TMEM117Q9H0C3 514 aa10.91□□□□□ -0.66
NUP54-203ENST00000504173 NSUN3Q9H649 340 aaKnown RBP10.91□□□□□ -0.66
NUP54-203ENST00000504173 RPF1Q9H9Y2 349 aaKnown RBP10.91□□□□□ -0.66
NUP54-203ENST00000504173 TOPORSQ9NS56 1045 aaPredicted RBP10.91□□□□□ -0.66
NUP54-203ENST00000504173 RNF19AQ9NV58 838 aa10.91□□□□□ -0.66
NUP54-203ENST00000504173 CLDND1Q9NY35 253 aa10.91□□□□□ -0.66
NUP54-203ENST00000504173 HSPBP1Q9NZL4 362 aa10.91□□□□□ -0.66
NUP54-203ENST00000504173 KLK14Q9P0G3 267 aa10.91□□□□□ -0.66
NUP54-203ENST00000504173 TRAF3IP3Q9Y228 551 aa10.91□□□□□ -0.66
NUP54-203ENST00000504173 INPP5FQ9Y2H2 1132 aa10.91□□□□□ -0.66
NUP54-203ENST00000504173 GIT1Q9Y2X7 761 aa10.91□□□□□ -0.66
NUP54-203ENST00000504173 BICDL2A1A5D9 508 aa10.9□□□□□ -0.66
NUP54-203ENST00000504173 TRIM49BA6NDI0 452 aa10.9□□□□□ -0.66
NUP54-203ENST00000504173 TULP1O00294 542 aaPredicted RBP10.9□□□□□ -0.66
NUP54-203ENST00000504173 FAM189A1O60320 539 aa10.9□□□□□ -0.66
NUP54-203ENST00000504173 EXOC3O60645 756 aa10.9□□□□□ -0.66
NUP54-203ENST00000504173 OFD1O75665 1012 aa10.9□□□□□ -0.66
NUP54-203ENST00000504173 DGKIO75912 1065 aa10.9□□□□□ -0.66
NUP54-203ENST00000504173 CXCL8P10145 99 aa10.9□□□□□ -0.66
NUP54-203ENST00000504173 NR2F2P24468 414 aa10.9□□□□□ -0.66
NUP54-203ENST00000504173 RPL13P26373 211 aaKnown RBP10.9□□□□□ -0.66
NUP54-203ENST00000504173 MLH1P40692 756 aa10.9□□□□□ -0.66
NUP54-203ENST00000504173 TNFSF9P41273 254 aa10.9□□□□□ -0.66
NUP54-203ENST00000504173 STX17P56962 302 aa10.9□□□□□ -0.66
NUP54-203ENST00000504173 LRRC63Q05C16 580 aa10.9□□□□□ -0.66
NUP54-203ENST00000504173 HSP90AA2PQ14568 343 aaPredicted RBP10.9□□□□□ -0.66
NUP54-203ENST00000504173 STX1AQ16623 288 aa10.9□□□□□ -0.66
NUP54-203ENST00000504173 EDRF1Q3B7T1 1238 aa10.9□□□□□ -0.66
NUP54-203ENST00000504173 PAN2Q504Q3 1202 aaKnown RBP10.9□□□□□ -0.66
NUP54-203ENST00000504173 ZCWPW2Q504Y3 356 aa10.9□□□□□ -0.66
NUP54-203ENST00000504173 NOMO2Q5JPE7 1267 aa10.9□□□□□ -0.66
NUP54-203ENST00000504173 CENPPQ6IPU0 288 aa10.9□□□□□ -0.66
NUP54-203ENST00000504173 XXYLT1Q8NBI6 393 aa10.9□□□□□ -0.66
NUP54-203ENST00000504173 ZSWIM2Q8NEG5 633 aa10.9□□□□□ -0.66
NUP54-203ENST00000504173 KIAA1586Q9HCI6 787 aa10.9□□□□□ -0.66
NUP54-203ENST00000504173 ANO10Q9NW15 660 aa10.9□□□□□ -0.66
NUP54-203ENST00000504173 INSL6Q9Y581 213 aa10.9□□□□□ -0.66
NUP54-203ENST00000504173 SPTBN2O15020 2390 aa10.89□□□□□ -0.67
NUP54-203ENST00000504173 SYCE3A1L190 88 aa10.89□□□□□ -0.67
NUP54-203ENST00000504173 ARL5CA6NH57 179 aa10.89□□□□□ -0.67
NUP54-203ENST00000504173 SCNN1GP51170 649 aa10.89□□□□□ -0.67
NUP54-203ENST00000504173 PMS1P54277 932 aaKnown RBP10.89□□□□□ -0.67
NUP54-203ENST00000504173 HTRA4P83105 476 aaPredicted RBP10.89□□□□□ -0.67
NUP54-203ENST00000504173 PPP2R3AQ06190 1150 aa10.89□□□□□ -0.67
NUP54-203ENST00000504173 TYRO3Q06418 890 aa10.89□□□□□ -0.67
NUP54-203ENST00000504173 BTG3Q14201 252 aaPredicted RBP10.89□□□□□ -0.67
NUP54-203ENST00000504173 MYBPC2Q14324 1141 aa10.89□□□□□ -0.67
NUP54-203ENST00000504173 ENOX2Q16206 610 aaKnown RBP10.89□□□□□ -0.67
NUP54-203ENST00000504173 NFIL3Q16649 462 aa10.89□□□□□ -0.67
NUP54-203ENST00000504173 SLC10A6Q3KNW5 377 aa10.89□□□□□ -0.67
NUP54-203ENST00000504173 ZSCAN23Q3MJ62 389 aa10.89□□□□□ -0.67
NUP54-203ENST00000504173 CEP135Q66GS9 1140 aa10.89□□□□□ -0.67
NUP54-203ENST00000504173 ANKRD40Q6AI12 368 aa10.89□□□□□ -0.67
NUP54-203ENST00000504173 EP400NLQ6ZTU2 488 aa10.89□□□□□ -0.67
NUP54-203ENST00000504173 SLC9A9Q8IVB4 645 aa10.89□□□□□ -0.67
NUP54-203ENST00000504173 CMTR2Q8IYT2 770 aaKnown RBP10.89□□□□□ -0.67
NUP54-203ENST00000504173 LRRC43Q8N309 656 aa10.89□□□□□ -0.67
NUP54-203ENST00000504173 RSPH1Q8WYR4 309 aa10.89□□□□□ -0.67
NUP54-203ENST00000504173 ZNF689Q96CS4 500 aaPredicted RBP10.89□□□□□ -0.67
NUP54-203ENST00000504173 FAM212AQ96EL1 285 aa10.89□□□□□ -0.67
NUP54-203ENST00000504173 ZFP42Q96MM3 310 aa10.89□□□□□ -0.67
NUP54-203ENST00000504173 SAMD11Q96NU1 681 aa10.89□□□□□ -0.67
NUP54-203ENST00000504173 CASD1Q96PB1 797 aa10.89□□□□□ -0.67
NUP54-203ENST00000504173 C17orf80Q9BSJ5 609 aa10.89□□□□□ -0.67
NUP54-203ENST00000504173 MRPL9Q9BYD2 267 aaKnown RBP10.89□□□□□ -0.67
NUP54-203ENST00000504173 RC3H2Q9HBD1 1191 aaKnown RBP10.89□□□□□ -0.67
NUP54-203ENST00000504173 RBAKQ9NYW8 714 aaPredicted RBP10.89□□□□□ -0.67
NUP54-203ENST00000504173 CPSF3Q9UKF6 684 aaKnown RBP10.89□□□□□ -0.67
NUP54-203ENST00000504173 ZNF233A6NK53 670 aa10.88□□□□□ -0.67
NUP54-203ENST00000504173 H3BNC9 293 aa10.88□□□□□ -0.67
NUP54-203ENST00000504173 CITO14578 2027 aa10.88□□□□□ -0.67
NUP54-203ENST00000504173 CETN3O15182 167 aa10.88□□□□□ -0.67
NUP54-203ENST00000504173 INPPL1O15357 1258 aa10.88□□□□□ -0.67
NUP54-203ENST00000504173 POMCP01189 267 aa10.88□□□□□ -0.67
NUP54-203ENST00000504173 CCDC192P0DO97 292 aa10.88□□□□□ -0.67
NUP54-203ENST00000504173 FKBP3Q00688 224 aaKnown RBP10.88□□□□□ -0.67
NUP54-203ENST00000504173 POU5F1Q01860 360 aaKnown RBP10.88□□□□□ -0.67
NUP54-203ENST00000504173 RNASELQ05823 741 aaKnown RBP10.88□□□□□ -0.67
NUP54-203ENST00000504173 ADAM9Q13443 819 aa10.88□□□□□ -0.67
NUP54-203ENST00000504173 SNRNP35Q16560 246 aaKnown RBP10.88□□□□□ -0.67
NUP54-203ENST00000504173 GLRA4Q5JXX5 417 aa10.88□□□□□ -0.67
NUP54-203ENST00000504173 TTI2Q6NXR4 508 aa10.88□□□□□ -0.67
NUP54-203ENST00000504173 CRELD2Q6UXH1 353 aaPredicted RBP10.88□□□□□ -0.67
NUP54-203ENST00000504173 CBWD2Q8IUF1 395 aa10.88□□□□□ -0.67
NUP54-203ENST00000504173 BRSK2Q8IWQ3 736 aa10.88□□□□□ -0.67
NUP54-203ENST00000504173 RDH13Q8NBN7 331 aa10.88□□□□□ -0.67
NUP54-203ENST00000504173 TMEM174Q8WUU8 243 aa10.88□□□□□ -0.67
NUP54-203ENST00000504173 FAM193BQ96PV7 902 aaPredicted RBP10.88□□□□□ -0.67
NUP54-203ENST00000504173 PLEKHA5Q9HAU0 1116 aa10.88□□□□□ -0.67
NUP54-203ENST00000504173 TBC1D13Q9NVG8 400 aa10.88□□□□□ -0.67
NUP54-203ENST00000504173 DMAC2Q9NW81 257 aa10.88□□□□□ -0.67
NUP54-203ENST00000504173 MIOSQ9NXC5 875 aa10.88□□□□□ -0.67
NUP54-203ENST00000504173 KANSL3Q9P2N6 904 aa10.88□□□□□ -0.67
NUP54-203ENST00000504173 RWDD2AQ9UIY3 292 aa10.88□□□□□ -0.67
NUP54-203ENST00000504173 FRMD4BQ9Y2L6 1034 aa10.88□□□□□ -0.67
NUP54-203ENST00000504173 RALGAPA2Q2PPJ7 1873 aa10.87□□□□□ -0.67
NUP54-203ENST00000504173 FNDC1Q4ZHG4 1894 aaPredicted RBP10.87□□□□□ -0.67
NUP54-203ENST00000504173 TTC26A0AVF1 554 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms