RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 ADM5C9JUS6 153 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 MAFO75444 373 aaPredicted RBP12.8□□□□□ -0.36
NUP54-202ENST00000502850 MAP2K2P36507 400 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 STAT5BP51692 787 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 NLRP11P59045 1033 aaKnown RBP12.8□□□□□ -0.36
NUP54-202ENST00000502850 SP2Q02086 613 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 PTP4A2Q12974 167 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 SLMAPQ14BN4 828 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 TRADDQ15628 312 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 TARBP2Q15633 366 aaKnown RBP12.8□□□□□ -0.36
NUP54-202ENST00000502850 DNAJC21Q5F1R6 531 aaKnown RBP12.8□□□□□ -0.36
NUP54-202ENST00000502850 PRAMEF18Q5VWM3 479 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 IER5Q5VY09 327 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 TDRD10Q5VZ19 366 aaKnown RBP12.8□□□□□ -0.36
NUP54-202ENST00000502850 CCDC137Q6PK04 289 aaKnown RBP12.8□□□□□ -0.36
NUP54-202ENST00000502850 DDX42Q86XP3 938 aaKnown RBP eCLIP12.8□□□□□ -0.36
NUP54-202ENST00000502850 MCOLN2Q8IZK6 566 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 PRELID2Q8N945 189 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.8□□□□□ -0.36
NUP54-202ENST00000502850 ATP8B4Q8TF62 1192 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 GRK7Q8WTQ7 553 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 SLCO2A1Q92959 643 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 TMEM143Q96AN5 459 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 ZBTB9Q96C00 473 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 TRIM51Q9BSJ1 452 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 MRPL4Q9BYD3 311 aaKnown RBP12.8□□□□□ -0.36
NUP54-202ENST00000502850 NEUROG2Q9H2A3 272 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 ANAPC7Q9UJX3 599 aa12.8□□□□□ -0.36
NUP54-202ENST00000502850 THSD7BQ9C0I4 1608 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 GRIN2DO15399 1336 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 H0YGN5 161 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 MYO1FO00160 1098 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 ATMINO43313 823 aaPredicted RBP12.79□□□□□ -0.36
NUP54-202ENST00000502850 PSTPIP1O43586 416 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 AOC2O75106 756 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 ECEL1O95672 775 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 CYP1A1P04798 512 aaPredicted RBP12.79□□□□□ -0.36
NUP54-202ENST00000502850 CLTAP09496 248 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 NUDT17P0C025 328 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 ATP4AP20648 1035 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 SLC26A2P50443 739 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 LBX1P52954 281 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 ZNF844Q08AG5 666 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 IFFO1Q0D2I5 559 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 MXD4Q14582 209 aaPredicted RBP12.79□□□□□ -0.36
NUP54-202ENST00000502850 UAP1Q16222 522 aaPredicted RBP12.79□□□□□ -0.36
NUP54-202ENST00000502850 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.79□□□□□ -0.36
NUP54-202ENST00000502850 SRLQ86TD4 932 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 WDR49Q8IV35 697 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 BRSK2Q8IWQ3 736 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 C2orf69Q8N8R5 385 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 BBXQ8WY36 941 aaPredicted RBP12.79□□□□□ -0.36
NUP54-202ENST00000502850 ZNF516Q92618 1163 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 BEGAINQ9BUH8 593 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 STMN4Q9H169 189 aaPredicted RBP12.79□□□□□ -0.36
NUP54-202ENST00000502850 LRRC19Q9H756 370 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 ERVK-5Q9HDB9 667 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 ZDHHC18Q9NUE0 388 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 CNTN6Q9UQ52 1028 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 NFS1Q9Y697 457 aa12.79□□□□□ -0.36
NUP54-202ENST00000502850 ADGRA2Q96PE1 1338 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 ATXN2Q99700 1313 aaKnown RBP12.78□□□□□ -0.36
NUP54-202ENST00000502850 A0A0G2JLL6 359 aaPredicted RBP12.78□□□□□ -0.36
NUP54-202ENST00000502850 GSTTP1A0A1W2PQM5 241 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 EBAG9O00559 213 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 CXCL11O14625 94 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 IRF6O14896 467 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 CLDN3O15551 220 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 PYGMP11217 842 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 GNA15P30679 374 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 COILP38432 576 aaPredicted RBP12.78□□□□□ -0.36
NUP54-202ENST00000502850 CETN2P41208 172 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 PTGIRP43119 386 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 MARCKSL1P49006 195 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 HUNKP57058 714 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 NOP14P78316 857 aaKnown RBP12.78□□□□□ -0.36
NUP54-202ENST00000502850 CNTN2Q02246 1040 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 C1QBPQ07021 282 aaKnown RBP12.78□□□□□ -0.36
NUP54-202ENST00000502850 DENND2CQ68D51 928 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 KCTD16Q68DU8 428 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 CDCA2Q69YH5 1023 aaPredicted RBP12.78□□□□□ -0.36
NUP54-202ENST00000502850 B4GALNT4Q76KP1 1039 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 PRRT2Q7Z6L0 340 aaPredicted RBP12.78□□□□□ -0.36
NUP54-202ENST00000502850 NCAPG2Q86XI2 1143 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 CCDC105Q8IYK2 499 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 C3orf20Q8ND61 904 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 BCAS4Q8TDM0 211 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 PI4K2AQ9BTU6 479 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 TXLNGYQ9BZA5 131 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 PABPC3Q9H361 631 aaKnown RBP12.78□□□□□ -0.36
NUP54-202ENST00000502850 CNOT10Q9H9A5 744 aaKnown RBP12.78□□□□□ -0.36
NUP54-202ENST00000502850 GBA2Q9HCG7 927 aaPredicted RBP12.78□□□□□ -0.36
NUP54-202ENST00000502850 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.78□□□□□ -0.36
NUP54-202ENST00000502850 ANKFY1Q9P2R3 1169 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 PCDHB4Q9Y5E5 795 aa12.78□□□□□ -0.36
NUP54-202ENST00000502850 FSCN2O14926 492 aa12.77□□□□□ -0.36
NUP54-202ENST00000502850 TOM1L1O75674 476 aa12.77□□□□□ -0.36
NUP54-202ENST00000502850 LSM8O95777 96 aaKnown RBP12.77□□□□□ -0.36
NUP54-202ENST00000502850 NF2P35240 595 aa12.77□□□□□ -0.36
NUP54-202ENST00000502850 TCF7P36402 384 aaPredicted RBP12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms