RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 TMEM191CA6NGB0 347 aa7.48□□□□□ -1.21
SF3B1-212ENST00000496458 GRM6O15303 877 aa7.48□□□□□ -1.21
SF3B1-212ENST00000496458 CFIP05156 583 aa7.48□□□□□ -1.21
SF3B1-212ENST00000496458 ELANEP08246 267 aa7.48□□□□□ -1.21
SF3B1-212ENST00000496458 BMPR1AP36894 532 aa7.48□□□□□ -1.21
SF3B1-212ENST00000496458 ZNF280AP59817 542 aaPredicted RBP7.48□□□□□ -1.21
SF3B1-212ENST00000496458 MXRA7P84157 204 aa7.48□□□□□ -1.21
SF3B1-212ENST00000496458 EXOSC10Q01780 885 aaKnown RBP7.48□□□□□ -1.21
SF3B1-212ENST00000496458 OCA2Q04671 838 aa7.48□□□□□ -1.21
SF3B1-212ENST00000496458 FSTL1Q12841 308 aa7.48□□□□□ -1.21
SF3B1-212ENST00000496458 GADL1Q6ZQY3 521 aa7.48□□□□□ -1.21
SF3B1-212ENST00000496458 MRGPRGQ86SM5 289 aa7.48□□□□□ -1.21
SF3B1-212ENST00000496458 ARHGEF19Q8IW93 802 aa7.48□□□□□ -1.21
SF3B1-212ENST00000496458 FITM2Q8N6M3 262 aa7.48□□□□□ -1.21
SF3B1-212ENST00000496458 MRGPRX4Q96LA9 322 aa7.48□□□□□ -1.21
SF3B1-212ENST00000496458 IKZF4Q9H2S9 585 aa7.48□□□□□ -1.21
SF3B1-212ENST00000496458 DKK2Q9UBU2 259 aa7.48□□□□□ -1.21
SF3B1-212ENST00000496458 USP25Q9UHP3 1055 aa7.48□□□□□ -1.21
SF3B1-212ENST00000496458 LUC7L2Q9Y383 392 aaKnown RBP7.48□□□□□ -1.21
SF3B1-212ENST00000496458 PCDHB1Q9Y5F3 818 aa7.48□□□□□ -1.21
SF3B1-212ENST00000496458 LOC105371045A0A1W2PR82 267 aa7.47□□□□□ -1.21
SF3B1-212ENST00000496458 CCDC78A2IDD5 438 aa7.47□□□□□ -1.21
SF3B1-212ENST00000496458 RAMP2O60895 175 aa7.47□□□□□ -1.21
SF3B1-212ENST00000496458 HAUS5O94927 633 aa7.47□□□□□ -1.21
SF3B1-212ENST00000496458 CD1AP06126 327 aa7.47□□□□□ -1.21
SF3B1-212ENST00000496458 SBK3P0C264 359 aa7.47□□□□□ -1.21
SF3B1-212ENST00000496458 FGFR4P22455 802 aa7.47□□□□□ -1.21
SF3B1-212ENST00000496458 NOMO3P69849 1222 aa7.47□□□□□ -1.21
SF3B1-212ENST00000496458 HSD11B2P80365 405 aa7.47□□□□□ -1.21
SF3B1-212ENST00000496458 GUCY1B3Q02153 619 aa7.47□□□□□ -1.21
SF3B1-212ENST00000496458 RAB39AQ14964 217 aa7.47□□□□□ -1.21
SF3B1-212ENST00000496458 NOMO2Q5JPE7 1267 aa7.47□□□□□ -1.21
SF3B1-212ENST00000496458 LAIR1Q6GTX8 287 aa7.47□□□□□ -1.21
SF3B1-212ENST00000496458 CMTR2Q8IYT2 770 aaKnown RBP7.47□□□□□ -1.21
SF3B1-212ENST00000496458 TBC1D15Q8TC07 691 aa7.47□□□□□ -1.21
SF3B1-212ENST00000496458 CHMP4CQ96CF2 233 aa7.47□□□□□ -1.21
SF3B1-212ENST00000496458 WDR11Q9BZH6 1224 aa7.47□□□□□ -1.21
SF3B1-212ENST00000496458 SERHL2Q9H4I8 314 aa7.47□□□□□ -1.21
SF3B1-212ENST00000496458 CFAP20Q9Y6A4 193 aaKnown RBP7.47□□□□□ -1.21
SF3B1-212ENST00000496458 WDR33Q9C0J8 1336 aaKnown RBP7.47□□□□□ -1.21
SF3B1-212ENST00000496458 A0A087X1B8 175 aa7.46□□□□□ -1.22
SF3B1-212ENST00000496458 RPLP2P05387 115 aaKnown RBP7.46□□□□□ -1.22
SF3B1-212ENST00000496458 CKBP12277 381 aa7.46□□□□□ -1.22
SF3B1-212ENST00000496458 SLC6A4P31645 630 aa7.46□□□□□ -1.22
SF3B1-212ENST00000496458 NEK2P51955 445 aa7.46□□□□□ -1.22
SF3B1-212ENST00000496458 IGBP1P78318 339 aa7.46□□□□□ -1.22
SF3B1-212ENST00000496458 TLE1Q04724 770 aa7.46□□□□□ -1.22
SF3B1-212ENST00000496458 TP53BP2Q13625 1128 aa7.46□□□□□ -1.22
SF3B1-212ENST00000496458 PABPC1LQ4VXU2 614 aaKnown RBP7.46□□□□□ -1.22
SF3B1-212ENST00000496458 B3GNTL1Q67FW5 361 aaPredicted RBP7.46□□□□□ -1.22
SF3B1-212ENST00000496458 TMEM132CQ8N3T6 1108 aa7.46□□□□□ -1.22
SF3B1-212ENST00000496458 NLGN4YQ8NFZ3 816 aaPredicted RBP7.46□□□□□ -1.22
SF3B1-212ENST00000496458 RNF31Q96EP0 1072 aa7.46□□□□□ -1.22
SF3B1-212ENST00000496458 MARS2Q96GW9 593 aaKnown RBP7.46□□□□□ -1.22
SF3B1-212ENST00000496458 FOXN1O15353 648 aa7.45□□□□□ -1.22
SF3B1-212ENST00000496458 B3GALT2O43825 422 aa7.45□□□□□ -1.22
SF3B1-212ENST00000496458 CDKL5O76039 1030 aa7.45□□□□□ -1.22
SF3B1-212ENST00000496458 SPDEFO95238 335 aa7.45□□□□□ -1.22
SF3B1-212ENST00000496458 GPANK1O95872 356 aa7.45□□□□□ -1.22
SF3B1-212ENST00000496458 MTHFD1P11586 935 aaKnown RBP7.45□□□□□ -1.22
SF3B1-212ENST00000496458 ZEB1P37275 1124 aaPredicted RBP7.45□□□□□ -1.22
SF3B1-212ENST00000496458 SPDYE7PQ495Y7 208 aa7.45□□□□□ -1.22
SF3B1-212ENST00000496458 TMEM240Q5SV17 173 aa7.45□□□□□ -1.22
SF3B1-212ENST00000496458 NSUN6Q8TEA1 469 aaKnown RBP7.45□□□□□ -1.22
SF3B1-212ENST00000496458 DMRTA2Q96SC8 542 aa7.45□□□□□ -1.22
SF3B1-212ENST00000496458 CEP89Q96ST8 783 aa7.45□□□□□ -1.22
SF3B1-212ENST00000496458 ALOXE3Q9BYJ1 711 aa7.45□□□□□ -1.22
SF3B1-212ENST00000496458 TYW1Q9NV66 732 aaKnown RBP7.45□□□□□ -1.22
SF3B1-212ENST00000496458 NOX1Q9Y5S8 564 aa7.45□□□□□ -1.22
SF3B1-212ENST00000496458 GRID2IPA4D2P6 1211 aa7.44□□□□□ -1.22
SF3B1-212ENST00000496458 IL33O95760 270 aa7.44□□□□□ -1.22
SF3B1-212ENST00000496458 SLFN5Q08AF3 891 aa7.44□□□□□ -1.22
SF3B1-212ENST00000496458 ARMC6Q6NXE6 501 aa7.44□□□□□ -1.22
SF3B1-212ENST00000496458 FOXR2Q6PJQ5 311 aa7.44□□□□□ -1.22
SF3B1-212ENST00000496458 TTC7BQ86TV6 843 aa7.44□□□□□ -1.22
SF3B1-212ENST00000496458 LCORLQ8N3X6 602 aa7.44□□□□□ -1.22
SF3B1-212ENST00000496458 CPA6Q8N4T0 437 aa7.44□□□□□ -1.22
SF3B1-212ENST00000496458 NUP133Q8WUM0 1156 aa7.44□□□□□ -1.22
SF3B1-212ENST00000496458 VRK1Q99986 396 aaPredicted RBP7.44□□□□□ -1.22
SF3B1-212ENST00000496458 PACSIN1Q9BY11 444 aa7.44□□□□□ -1.22
SF3B1-212ENST00000496458 CYP4F11Q9HBI6 524 aa7.44□□□□□ -1.22
SF3B1-212ENST00000496458 AASDHPPTQ9NRN7 309 aa7.44□□□□□ -1.22
SF3B1-212ENST00000496458 DDX56Q9NY93 547 aaKnown RBP7.44□□□□□ -1.22
SF3B1-212ENST00000496458 RNF181Q9P0P0 153 aa7.44□□□□□ -1.22
SF3B1-212ENST00000496458 CALCOCO1Q9P1Z2 691 aa7.44□□□□□ -1.22
SF3B1-212ENST00000496458 MTO1Q9Y2Z2 717 aaKnown RBP7.44□□□□□ -1.22
SF3B1-212ENST00000496458 ERN1O75460 977 aaKnown RBP7.43□□□□□ -1.22
SF3B1-212ENST00000496458 FOSP01100 380 aaPredicted RBP7.43□□□□□ -1.22
SF3B1-212ENST00000496458 FCER1AP12319 257 aa7.43□□□□□ -1.22
SF3B1-212ENST00000496458 NCLP19338 710 aaKnown RBP7.43□□□□□ -1.22
SF3B1-212ENST00000496458 CXADRP78310 365 aa7.43□□□□□ -1.22
SF3B1-212ENST00000496458 DSC2Q02487 901 aa7.43□□□□□ -1.22
SF3B1-212ENST00000496458 KHDC1Q4VXA5 237 aaKnown RBP7.43□□□□□ -1.22
SF3B1-212ENST00000496458 Q6YL49 198 aa7.43□□□□□ -1.22
SF3B1-212ENST00000496458 BEND2Q8NDZ0 799 aa7.43□□□□□ -1.22
SF3B1-212ENST00000496458 STAG1Q8WVM7 1258 aa7.43□□□□□ -1.22
SF3B1-212ENST00000496458 ASB10Q8WXI3 467 aa7.43□□□□□ -1.22
SF3B1-212ENST00000496458 HOOK2Q96ED9 719 aa7.43□□□□□ -1.22
SF3B1-212ENST00000496458 HSPBAP1Q96EW2 488 aa7.43□□□□□ -1.22
SF3B1-212ENST00000496458 PNKPQ96T60 521 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms