RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 VPS16Q9H269 839 aa15□□□□□ -0.01
C9orf3-221ENST00000489562 DPP3Q9NY33 737 aa15□□□□□ -0.01
C9orf3-221ENST00000489562 CXXC1Q9P0U4 656 aaPredicted RBP15□□□□□ -0.01
C9orf3-221ENST00000489562 R3HCC1Q9Y3T6 440 aaKnown RBP15□□□□□ -0.01
C9orf3-221ENST00000489562 NLRC5Q86WI3 1866 aa14.99□□□□□ -0.01
C9orf3-221ENST00000489562 KIAA1671Q9BY89 1806 aa14.99□□□□□ -0.01
C9orf3-221ENST00000489562 TBKBP1A7MCY6 615 aa14.99□□□□□ -0.01
C9orf3-221ENST00000489562 PHACTR2O75167 634 aa14.99□□□□□ -0.01
C9orf3-221ENST00000489562 POMCP01189 267 aa14.99□□□□□ -0.01
C9orf3-221ENST00000489562 C4BPAP04003 597 aaKnown RBP14.99□□□□□ -0.01
C9orf3-221ENST00000489562 ATP2A2P16615 1042 aaKnown RBP14.99□□□□□ -0.01
C9orf3-221ENST00000489562 LRPAP1P30533 357 aa14.99□□□□□ -0.01
C9orf3-221ENST00000489562 RPL9P32969 192 aaKnown RBP14.99□□□□□ -0.01
C9orf3-221ENST00000489562 BMP8BP34820 402 aa14.99□□□□□ -0.01
C9orf3-221ENST00000489562 GSE1Q14687 1217 aa14.99□□□□□ -0.01
C9orf3-221ENST00000489562 LMBRD2Q68DH5 695 aaPredicted RBP14.99□□□□□ -0.01
C9orf3-221ENST00000489562 TRAPPC11Q7Z392 1133 aa14.99□□□□□ -0.01
C9orf3-221ENST00000489562 HERC6Q8IVU3 1022 aa14.99□□□□□ -0.01
C9orf3-221ENST00000489562 FBXL13Q8NEE6 735 aa14.99□□□□□ -0.01
C9orf3-221ENST00000489562 ZNF516Q92618 1163 aa14.99□□□□□ -0.01
C9orf3-221ENST00000489562 ZNF689Q96CS4 500 aaPredicted RBP14.99□□□□□ -0.01
C9orf3-221ENST00000489562 DDX27Q96GQ7 796 aaKnown RBP14.99□□□□□ -0.01
C9orf3-221ENST00000489562 YME1L1Q96TA2 773 aa14.99□□□□□ -0.01
C9orf3-221ENST00000489562 ZBED2Q9BTP6 218 aa14.99□□□□□ -0.01
C9orf3-221ENST00000489562 CXCL16Q9H2A7 254 aa14.99□□□□□ -0.01
C9orf3-221ENST00000489562 MMRN2Q9H8L6 949 aa14.99□□□□□ -0.01
C9orf3-221ENST00000489562 RC3H2Q9HBD1 1191 aaKnown RBP14.99□□□□□ -0.01
C9orf3-221ENST00000489562 RTN4Q9NQC3 1192 aaKnown RBP14.99□□□□□ -0.01
C9orf3-221ENST00000489562 TBC1D13Q9NVG8 400 aa14.99□□□□□ -0.01
C9orf3-221ENST00000489562 MIOSQ9NXC5 875 aa14.99□□□□□ -0.01
C9orf3-221ENST00000489562 PLAGL2Q9UPG8 496 aa14.99□□□□□ -0.01
C9orf3-221ENST00000489562 COQ4Q9Y3A0 265 aa14.99□□□□□ -0.01
C9orf3-221ENST00000489562 INSL6Q9Y581 213 aa14.99□□□□□ -0.01
C9orf3-221ENST00000489562 PAX3P23760 479 aa14.98□□□□□ -0.01
C9orf3-221ENST00000489562 PNPLA4P41247 253 aa14.98□□□□□ -0.01
C9orf3-221ENST00000489562 AFF1P51825 1210 aaKnown RBP14.98□□□□□ -0.01
C9orf3-221ENST00000489562 RBP5P82980 135 aa14.98□□□□□ -0.01
C9orf3-221ENST00000489562 HTRA4P83105 476 aaPredicted RBP14.98□□□□□ -0.01
C9orf3-221ENST00000489562 PLCB2Q00722 1185 aa14.98□□□□□ -0.01
C9orf3-221ENST00000489562 DSC1Q08554 894 aa14.98□□□□□ -0.01
C9orf3-221ENST00000489562 TRPC3Q13507 836 aa14.98□□□□□ -0.01
C9orf3-221ENST00000489562 SHHQ15465 462 aa14.98□□□□□ -0.01
C9orf3-221ENST00000489562 NAB2Q15742 525 aa14.98□□□□□ -0.01
C9orf3-221ENST00000489562 CBWD6Q4V339 395 aa14.98□□□□□ -0.01
C9orf3-221ENST00000489562 CBWD3Q5JTY5 395 aa14.98□□□□□ -0.01
C9orf3-221ENST00000489562 CBWD5Q5RIA9 395 aa14.98□□□□□ -0.01
C9orf3-221ENST00000489562 TDRD10Q5VZ19 366 aaKnown RBP14.98□□□□□ -0.01
C9orf3-221ENST00000489562 GBP6Q6ZN66 633 aa14.98□□□□□ -0.01
C9orf3-221ENST00000489562 C1orf127Q8N9H9 656 aa14.98□□□□□ -0.01
C9orf3-221ENST00000489562 C18orf25Q96B23 403 aaPredicted RBP14.98□□□□□ -0.01
C9orf3-221ENST00000489562 ZNF560Q96MR9 790 aa14.98□□□□□ -0.01
C9orf3-221ENST00000489562 TMEM175Q9BSA9 504 aa14.98□□□□□ -0.01
C9orf3-221ENST00000489562 IMPG2Q9BZV3 1241 aa14.98□□□□□ -0.01
C9orf3-221ENST00000489562 GRPEL1Q9HAV7 217 aa14.98□□□□□ -0.01
C9orf3-221ENST00000489562 IFNKQ9P0W0 207 aa14.98□□□□□ -0.01
C9orf3-221ENST00000489562 TUBGCP4Q9UGJ1 667 aa14.98□□□□□ -0.01
C9orf3-221ENST00000489562 ZC3H11AO75152 810 aaKnown RBP eCLIP14.97□□□□□ -0.01
C9orf3-221ENST00000489562 ATICP31939 592 aa14.97□□□□□ -0.01
C9orf3-221ENST00000489562 PIK3CAP42336 1068 aa14.97□□□□□ -0.01
C9orf3-221ENST00000489562 MRE11P49959 708 aa14.97□□□□□ -0.01
C9orf3-221ENST00000489562 UBXN1Q04323 297 aa14.97□□□□□ -0.01
C9orf3-221ENST00000489562 NCOA4Q13772 614 aa14.97□□□□□ -0.01
C9orf3-221ENST00000489562 BTG3Q14201 252 aaPredicted RBP14.97□□□□□ -0.01
C9orf3-221ENST00000489562 NR1I3Q14994 352 aa14.97□□□□□ -0.01
C9orf3-221ENST00000489562 C9orf50Q5SZB4 431 aa14.97□□□□□ -0.01
C9orf3-221ENST00000489562 FAM117BQ6P1L5 589 aa14.97□□□□□ -0.01
C9orf3-221ENST00000489562 LRRC52Q8N7C0 313 aa14.97□□□□□ -0.01
C9orf3-221ENST00000489562 CCDC150Q8NCX0 1101 aa14.97□□□□□ -0.01
C9orf3-221ENST00000489562 TAF4BQ92750 862 aa14.97□□□□□ -0.01
C9orf3-221ENST00000489562 ERGIC2Q96RQ1 377 aa14.97□□□□□ -0.01
C9orf3-221ENST00000489562 RAD9AQ99638 391 aa14.97□□□□□ -0.01
C9orf3-221ENST00000489562 TRIM5Q9C035 493 aa14.97□□□□□ -0.01
C9orf3-221ENST00000489562 A0A1W2PQC6 194 aa14.96□□□□□ -0.01
C9orf3-221ENST00000489562 ANO9A1A5B4 782 aa14.96□□□□□ -0.01
C9orf3-221ENST00000489562 STAU1O95793 577 aaKnown RBP14.96□□□□□ -0.01
C9orf3-221ENST00000489562 HLA-DRAP01903 254 aa14.96□□□□□ -0.01
C9orf3-221ENST00000489562 ITGB3P05106 788 aa14.96□□□□□ -0.01
C9orf3-221ENST00000489562 KRT19P08727 400 aa14.96□□□□□ -0.01
C9orf3-221ENST00000489562 POLR2BP30876 1174 aaKnown RBP14.96□□□□□ -0.01
C9orf3-221ENST00000489562 GATMP50440 423 aa14.96□□□□□ -0.01
C9orf3-221ENST00000489562 SOX4Q06945 474 aaPredicted RBP14.96□□□□□ -0.01
C9orf3-221ENST00000489562 MYO1EQ12965 1108 aa14.96□□□□□ -0.01
C9orf3-221ENST00000489562 EXOC3L4Q17RC7 722 aa14.96□□□□□ -0.01
C9orf3-221ENST00000489562 SGSM1Q2NKQ1 1148 aa14.96□□□□□ -0.01
C9orf3-221ENST00000489562 PAN2Q504Q3 1202 aaKnown RBP14.96□□□□□ -0.01
C9orf3-221ENST00000489562 EPC2Q52LR7 807 aa14.96□□□□□ -0.01
C9orf3-221ENST00000489562 C9orf57Q5W0N0 161 aa14.96□□□□□ -0.01
C9orf3-221ENST00000489562 COLGALT2Q8IYK4 626 aa14.96□□□□□ -0.01
C9orf3-221ENST00000489562 SP7Q8TDD2 431 aaPredicted RBP14.96□□□□□ -0.01
C9orf3-221ENST00000489562 TAS1R2Q8TE23 839 aa14.96□□□□□ -0.01
C9orf3-221ENST00000489562 NAP1L5Q96NT1 182 aaPredicted RBP14.96□□□□□ -0.01
C9orf3-221ENST00000489562 XPO4Q9C0E2 1151 aaKnown RBP14.96□□□□□ -0.01
C9orf3-221ENST00000489562 RAB20Q9NX57 234 aa14.96□□□□□ -0.01
C9orf3-221ENST00000489562 GCNT4Q9P109 453 aa14.96□□□□□ -0.01
C9orf3-221ENST00000489562 SIX4Q9UIU6 781 aa14.96□□□□□ -0.01
C9orf3-221ENST00000489562 DAAM1Q9Y4D1 1078 aa14.96□□□□□ -0.01
C9orf3-221ENST00000489562 TMEM189-UBE2V1I3L0A0 370 aa14.95□□□□□ -0.02
C9orf3-221ENST00000489562 PODXLO00592 558 aa14.95□□□□□ -0.02
C9orf3-221ENST00000489562 PIRO00625 290 aa14.95□□□□□ -0.02
C9orf3-221ENST00000489562 TLL1O43897 1013 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms