RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 KLHDC4Q8TBB5 520 aa6.83□□□□□ -1.32
USP48-209ENST00000487880 PGBD4Q96DM1 585 aa6.83□□□□□ -1.32
USP48-209ENST00000487880 WDCPQ9H6R7 721 aa6.83□□□□□ -1.32
USP48-209ENST00000487880 SIDT1Q9NXL6 827 aaKnown RBP6.83□□□□□ -1.32
USP48-209ENST00000487880 DDX20Q9UHI6 824 aaKnown RBP6.83□□□□□ -1.32
USP48-209ENST00000487880 A0A088AWK7 358 aa6.82□□□□□ -1.32
USP48-209ENST00000487880 A6NNZ2 444 aa6.82□□□□□ -1.32
USP48-209ENST00000487880 LEFTY2O00292 366 aa6.82□□□□□ -1.32
USP48-209ENST00000487880 PLSCR1O15162 318 aa6.82□□□□□ -1.32
USP48-209ENST00000487880 SLC43A1O75387 559 aa6.82□□□□□ -1.32
USP48-209ENST00000487880 MYBP10242 640 aa6.82□□□□□ -1.32
USP48-209ENST00000487880 PRDX5P30044 214 aa6.82□□□□□ -1.32
USP48-209ENST00000487880 TOB2Q14106 344 aaPredicted RBP6.82□□□□□ -1.32
USP48-209ENST00000487880 GALEQ14376 348 aa6.82□□□□□ -1.32
USP48-209ENST00000487880 PLS1Q14651 629 aa6.82□□□□□ -1.32
USP48-209ENST00000487880 GRM3Q14832 879 aa6.82□□□□□ -1.32
USP48-209ENST00000487880 FLYWCH1Q4VC44 716 aa6.82□□□□□ -1.32
USP48-209ENST00000487880 HSP90AB2PQ58FF8 381 aa6.82□□□□□ -1.32
USP48-209ENST00000487880 FAM102AQ5T9C2 384 aaPredicted RBP6.82□□□□□ -1.32
USP48-209ENST00000487880 DGKHQ86XP1 1220 aa6.82□□□□□ -1.32
USP48-209ENST00000487880 TMPRSS6Q8IU80 811 aa6.82□□□□□ -1.32
USP48-209ENST00000487880 NLGN4YQ8NFZ3 816 aaPredicted RBP6.82□□□□□ -1.32
USP48-209ENST00000487880 NEU1Q99519 415 aa6.82□□□□□ -1.32
USP48-209ENST00000487880 PRDM11Q9NQV5 511 aa6.82□□□□□ -1.32
USP48-209ENST00000487880 ABCF2Q9UG63 623 aa6.82□□□□□ -1.32
USP48-209ENST00000487880 C1QTNF3-AMACRE9PGA6 284 aa6.81□□□□□ -1.32
USP48-209ENST00000487880 FAM227AF5H4B4 570 aa6.81□□□□□ -1.32
USP48-209ENST00000487880 KIF3BO15066 747 aa6.81□□□□□ -1.32
USP48-209ENST00000487880 KIAA0391O15091 583 aaKnown RBP6.81□□□□□ -1.32
USP48-209ENST00000487880 TRIM24O15164 1050 aa6.81□□□□□ -1.32
USP48-209ENST00000487880 HAUS5O94927 633 aa6.81□□□□□ -1.32
USP48-209ENST00000487880 SLC6A2P23975 617 aa6.81□□□□□ -1.32
USP48-209ENST00000487880 SMARCA1P28370 1054 aa6.81□□□□□ -1.32
USP48-209ENST00000487880 APOBEC3AP31941 199 aaPredicted RBP6.81□□□□□ -1.32
USP48-209ENST00000487880 CHN2P52757 468 aa6.81□□□□□ -1.32
USP48-209ENST00000487880 CRHR2Q13324 411 aa6.81□□□□□ -1.32
USP48-209ENST00000487880 CNGB1Q14028 1251 aaPredicted RBP6.81□□□□□ -1.32
USP48-209ENST00000487880 SPDYAQ5MJ70 313 aa6.81□□□□□ -1.32
USP48-209ENST00000487880 CCDC181Q5TID7 509 aa6.81□□□□□ -1.32
USP48-209ENST00000487880 AGAP9Q5VTM2 703 aa6.81□□□□□ -1.32
USP48-209ENST00000487880 CHST15Q7LFX5 561 aaPredicted RBP6.81□□□□□ -1.32
USP48-209ENST00000487880 ZFPM1Q8IX07 1006 aa6.81□□□□□ -1.32
USP48-209ENST00000487880 PALM2Q8IXS6 379 aa6.81□□□□□ -1.32
USP48-209ENST00000487880 KIAA0319LQ8IZA0 1049 aa6.81□□□□□ -1.32
USP48-209ENST00000487880 IL17DQ8TAD2 202 aa6.81□□□□□ -1.32
USP48-209ENST00000487880 ZNF703Q9H7S9 590 aaPredicted RBP6.81□□□□□ -1.32
USP48-209ENST00000487880 GEMIN8Q9NWZ8 242 aaKnown RBP6.81□□□□□ -1.32
USP48-209ENST00000487880 JKAMPQ9P055 326 aa6.81□□□□□ -1.32
USP48-209ENST00000487880 POGKQ9P215 609 aa6.81□□□□□ -1.32
USP48-209ENST00000487880 FEZ2Q9UHY8 353 aaPredicted RBP6.81□□□□□ -1.32
USP48-209ENST00000487880 CHST2Q9Y4C5 530 aa6.81□□□□□ -1.32
USP48-209ENST00000487880 HRGP04196 525 aa6.8□□□□□ -1.32
USP48-209ENST00000487880 PTTG1IPP53801 180 aa6.8□□□□□ -1.32
USP48-209ENST00000487880 USP14P54578 494 aa6.8□□□□□ -1.32
USP48-209ENST00000487880 RAB1AP62820 205 aa6.8□□□□□ -1.32
USP48-209ENST00000487880 NHLH2Q02577 135 aa6.8□□□□□ -1.32
USP48-209ENST00000487880 ANO6Q4KMQ2 910 aa6.8□□□□□ -1.32
USP48-209ENST00000487880 ZNF365Q70YC5 407 aa6.8□□□□□ -1.32
USP48-209ENST00000487880 PRRT2Q7Z6L0 340 aaPredicted RBP6.8□□□□□ -1.32
USP48-209ENST00000487880 SLC35A4Q96G79 324 aa6.8□□□□□ -1.32
USP48-209ENST00000487880 PACSIN1Q9BY11 444 aa6.8□□□□□ -1.32
USP48-209ENST00000487880 B3GNT5Q9BYG0 378 aa6.8□□□□□ -1.32
USP48-209ENST00000487880 MRPL46Q9H2W6 279 aaKnown RBP6.8□□□□□ -1.32
USP48-209ENST00000487880 GSTO2Q9H4Y5 243 aa6.8□□□□□ -1.32
USP48-209ENST00000487880 PNPOQ9NVS9 261 aa6.8□□□□□ -1.32
USP48-209ENST00000487880 CEP72Q9P209 647 aa6.8□□□□□ -1.32
USP48-209ENST00000487880 CDHR4A6H8M9 788 aa6.79□□□□□ -1.32
USP48-209ENST00000487880 PRSS29PA6NIE9 313 aa6.79□□□□□ -1.32
USP48-209ENST00000487880 PRSS23O95084 383 aa6.79□□□□□ -1.32
USP48-209ENST00000487880 ITGB1P05556 798 aa6.79□□□□□ -1.32
USP48-209ENST00000487880 GCSHP23434 173 aa6.79□□□□□ -1.32
USP48-209ENST00000487880 PIK3CGP48736 1102 aa6.79□□□□□ -1.32
USP48-209ENST00000487880 CCDC93Q567U6 631 aa6.79□□□□□ -1.32
USP48-209ENST00000487880 NPNTQ6UXI9 565 aa6.79□□□□□ -1.32
USP48-209ENST00000487880 MED25Q71SY5 747 aa6.79□□□□□ -1.32
USP48-209ENST00000487880 PPP1R3BQ86XI6 285 aa6.79□□□□□ -1.32
USP48-209ENST00000487880 RHOT2Q8IXI1 618 aa6.79□□□□□ -1.32
USP48-209ENST00000487880 EXTL1Q92935 676 aa6.79□□□□□ -1.32
USP48-209ENST00000487880 MTFMTQ96DP5 389 aaKnown RBP6.79□□□□□ -1.32
USP48-209ENST00000487880 FAM204AQ9H8W3 233 aa6.79□□□□□ -1.32
USP48-209ENST00000487880 GNL3LQ9NVN8 582 aaKnown RBP6.79□□□□□ -1.32
USP48-209ENST00000487880 RLIMQ9NVW2 624 aa6.79□□□□□ -1.32
USP48-209ENST00000487880 NCANO14594 1321 aa6.78□□□□□ -1.32
USP48-209ENST00000487880 AHRRA9YTQ3 701 aa6.78□□□□□ -1.32
USP48-209ENST00000487880 DIRC3C9JPN6 131 aa6.78□□□□□ -1.32
USP48-209ENST00000487880 H3BUI4 141 aa6.78□□□□□ -1.32
USP48-209ENST00000487880 MATN4O95460 622 aa6.78□□□□□ -1.32
USP48-209ENST00000487880 KRTAP10-2P60368 255 aa6.78□□□□□ -1.32
USP48-209ENST00000487880 SLFN5Q08AF3 891 aa6.78□□□□□ -1.32
USP48-209ENST00000487880 CCDC157Q569K6 752 aa6.78□□□□□ -1.32
USP48-209ENST00000487880 RABL3Q5HYI8 236 aa6.78□□□□□ -1.32
USP48-209ENST00000487880 EMC10Q5UCC4 262 aa6.78□□□□□ -1.32
USP48-209ENST00000487880 SWSAP1Q6NVH7 229 aa6.78□□□□□ -1.32
USP48-209ENST00000487880 RNF207Q6ZRF8 634 aa6.78□□□□□ -1.32
USP48-209ENST00000487880 SRGAP1Q7Z6B7 1085 aa6.78□□□□□ -1.32
USP48-209ENST00000487880 DAAM2Q86T65 1068 aa6.78□□□□□ -1.32
USP48-209ENST00000487880 FAM43AQ8N2R8 423 aa6.78□□□□□ -1.32
USP48-209ENST00000487880 FITM2Q8N6M3 262 aa6.78□□□□□ -1.32
USP48-209ENST00000487880 DCLRE1CQ96SD1 692 aaKnown RBP6.78□□□□□ -1.32
USP48-209ENST00000487880 C1orf43Q9BWL3 253 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms