RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 TRIM43BA6NCK2 446 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 ATP9BO43861 1147 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 PENKP01210 267 aaPredicted RBP8.23□□□□□ -1.09
USP4-211ENST00000485450 ADRB2P07550 413 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 GSTA1P08263 222 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 ALOX15P16050 662 aaPredicted RBP8.23□□□□□ -1.09
USP4-211ENST00000485450 CA8P35219 290 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 TCF7P36402 384 aaPredicted RBP8.23□□□□□ -1.09
USP4-211ENST00000485450 RFC5P40937 340 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 CCNG1P51959 295 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 C2orf54Q08AI8 447 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 ITGA7Q13683 1181 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 KBTBD12Q3ZCT8 623 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 LONRF3Q496Y0 759 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 CACNA2D3Q8IZS8 1091 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 ARFGAP2Q8N6H7 521 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 RNF25Q96BH1 459 aaPredicted RBP8.23□□□□□ -1.09
USP4-211ENST00000485450 TRIM43Q96BQ3 446 aaPredicted RBP8.23□□□□□ -1.09
USP4-211ENST00000485450 LENG1Q96BZ8 264 aaPredicted RBP8.23□□□□□ -1.09
USP4-211ENST00000485450 ANKRD27Q96NW4 1050 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 AP5M1Q9H0R1 490 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 WNT8AQ9H1J5 351 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 RABL2BQ9UNT1 228 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 PLXNA4Q9HCM2 1894 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 KIF26AQ9ULI4 1882 aaPredicted RBP8.23□□□□□ -1.09
USP4-211ENST00000485450 ABLIM1O14639 778 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 HBP1O60381 514 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 B4GALT4O60513 344 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 P4HBP07237 508 aaKnown RBP8.23□□□□□ -1.09
USP4-211ENST00000485450 SMIM10L2AP0DMW4 78 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 SMIM10L2BP0DMW5 78 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 ERCC5P28715 1186 aaPredicted RBP8.23□□□□□ -1.09
USP4-211ENST00000485450 SARSP49591 514 aaKnown RBP8.23□□□□□ -1.09
USP4-211ENST00000485450 MORC3Q14149 939 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 ZNF268Q14587 947 aaPredicted RBP8.23□□□□□ -1.09
USP4-211ENST00000485450 UGCGQ16739 394 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 OLFML1Q6UWY5 402 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 MREGQ8N565 214 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 TRIML1Q8N9V2 468 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 UHMK1Q8TAS1 419 aaKnown RBP8.23□□□□□ -1.09
USP4-211ENST00000485450 SP7Q8TDD2 431 aaPredicted RBP8.23□□□□□ -1.09
USP4-211ENST00000485450 SPATA33Q96N06 139 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 SYT15Q9BQS2 421 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 CCDC113Q9H0I3 377 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 DMGDHQ9UI17 866 aaKnown RBP8.23□□□□□ -1.09
USP4-211ENST00000485450 PCDHB6Q9Y5E3 794 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 NPTXRO95502 500 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 MMEP08473 750 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 SPATA31D3P0C874 917 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 VARSP26640 1264 aaKnown RBP8.23□□□□□ -1.09
USP4-211ENST00000485450 ARL2P36404 184 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 PSMC5P62195 406 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 DSC3Q14574 896 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 PPP1R7Q15435 360 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 QPCTQ16769 361 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 GDF6Q6KF10 455 aaPredicted RBP8.23□□□□□ -1.09
USP4-211ENST00000485450 DUS1LQ6P1R4 473 aaKnown RBP8.23□□□□□ -1.09
USP4-211ENST00000485450 FOXR2Q6PJQ5 311 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 SPATA31D4Q6ZUB0 917 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 NTPCRQ9BSD7 190 aaKnown RBP8.23□□□□□ -1.09
USP4-211ENST00000485450 LRRC1Q9BTT6 524 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 HTATIP2Q9BUP3 242 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 PPANQ9NQ55 473 aaKnown RBP8.23□□□□□ -1.09
USP4-211ENST00000485450 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.23□□□□□ -1.09
USP4-211ENST00000485450 TRIM10Q9UDY6 481 aa8.23□□□□□ -1.09
USP4-211ENST00000485450 KAT6AQ92794 2004 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 TMEM265A0A087WTH1 108 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 CCDC194A0A1B0GVG4 234 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 CFAP73A6NFT4 308 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 EIF4E1BA6NMX2 242 aaKnown RBP8.22□□□□□ -1.09
USP4-211ENST00000485450 DKC1O60832 514 aaKnown RBP eCLIP8.22□□□□□ -1.09
USP4-211ENST00000485450 DIAPH2O60879 1101 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 SMIM24O75264 130 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 LINC00271P0C7V0 271 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 MAPTP10636 758 aaKnown RBP8.22□□□□□ -1.09
USP4-211ENST00000485450 CDC42EP1Q00587 391 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 CFAP58Q5T655 872 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 ANO5Q75V66 913 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 CYFIP1Q7L576 1253 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 SH3RF1Q7Z6J0 888 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 AGAP11Q8TF27 550 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 TEKT4Q8WW24 435 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 DTNBP1Q96EV8 351 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 PNMA5Q96PV4 448 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 SLC12A4Q9UP95 1085 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 EFR3BQ9Y2G0 817 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 BAIAP3O94812 1187 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 NDUFA10O95299 355 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 CLTBP09497 229 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 SLC12A3P55017 1021 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 POU5F1Q01860 360 aaKnown RBP8.22□□□□□ -1.09
USP4-211ENST00000485450 TRIM29Q14134 588 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 FAM160B1Q5W0V3 765 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 FAM109BQ6ICB4 259 aaPredicted RBP8.22□□□□□ -1.09
USP4-211ENST00000485450 ANO7Q6IWH7 933 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 HERVK_113Q902F9 699 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 AZIN2Q96A70 460 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 NACC2Q96BF6 587 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 MAGEF1Q9HAY2 307 aa8.22□□□□□ -1.09
USP4-211ENST00000485450 SPC25Q9HBM1 224 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms