RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 GLP2RO95838 553 aa17.25■□□□□ 0.35
UPF3A-208ENST00000484246 NFICP08651 508 aa17.25■□□□□ 0.35
UPF3A-208ENST00000484246 PAX3P23760 479 aa17.25■□□□□ 0.35
UPF3A-208ENST00000484246 NRIP1P48552 1158 aa17.25■□□□□ 0.35
UPF3A-208ENST00000484246 ADAM15Q13444 863 aa17.25■□□□□ 0.35
UPF3A-208ENST00000484246 MYBPC2Q14324 1141 aa17.25■□□□□ 0.35
UPF3A-208ENST00000484246 TMEM132DQ14C87 1099 aa17.25■□□□□ 0.35
UPF3A-208ENST00000484246 NFIL3Q16649 462 aa17.25■□□□□ 0.35
UPF3A-208ENST00000484246 USP41Q3LFD5 358 aa17.25■□□□□ 0.35
UPF3A-208ENST00000484246 TPRNQ4KMQ1 711 aa17.25■□□□□ 0.35
UPF3A-208ENST00000484246 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.25■□□□□ 0.35
UPF3A-208ENST00000484246 SLC9A9Q8IVB4 645 aa17.25■□□□□ 0.35
UPF3A-208ENST00000484246 NELFCDQ8IXH7 590 aa17.25■□□□□ 0.35
UPF3A-208ENST00000484246 GUF1Q8N442 669 aaKnown RBP17.25■□□□□ 0.35
UPF3A-208ENST00000484246 C3orf58Q8NDZ4 430 aa17.25■□□□□ 0.35
UPF3A-208ENST00000484246 SAAL1Q96ER3 474 aa17.25■□□□□ 0.35
UPF3A-208ENST00000484246 COL25A1Q9BXS0 654 aaPredicted RBP17.25■□□□□ 0.35
UPF3A-208ENST00000484246 PRDM6Q9NQX0 595 aa17.25■□□□□ 0.35
UPF3A-208ENST00000484246 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.25■□□□□ 0.35
UPF3A-208ENST00000484246 MRPL17Q9NRX2 175 aaKnown RBP17.25■□□□□ 0.35
UPF3A-208ENST00000484246 RBAKQ9NYW8 714 aaPredicted RBP17.25■□□□□ 0.35
UPF3A-208ENST00000484246 ATG2AQ2TAZ0 1938 aa17.25■□□□□ 0.35
UPF3A-208ENST00000484246 PDXKO00764 312 aa17.24■□□□□ 0.35
UPF3A-208ENST00000484246 TRAPPC3O43617 180 aa17.24■□□□□ 0.35
UPF3A-208ENST00000484246 CSPG5O95196 566 aa17.24■□□□□ 0.35
UPF3A-208ENST00000484246 SMC2O95347 1197 aa17.24■□□□□ 0.35
UPF3A-208ENST00000484246 CXCL14O95715 111 aa17.24■□□□□ 0.35
UPF3A-208ENST00000484246 LTBRP36941 435 aa17.24■□□□□ 0.35
UPF3A-208ENST00000484246 AARSP49588 968 aaKnown RBP eCLIP17.24■□□□□ 0.35
UPF3A-208ENST00000484246 CREMQ03060 361 aa17.24■□□□□ 0.35
UPF3A-208ENST00000484246 PNOCQ13519 176 aa17.24■□□□□ 0.35
UPF3A-208ENST00000484246 AAK1Q2M2I8 961 aa17.24■□□□□ 0.35
UPF3A-208ENST00000484246 LEXMQ3ZCV2 418 aa17.24■□□□□ 0.35
UPF3A-208ENST00000484246 JADE1Q6IE81 842 aa17.24■□□□□ 0.35
UPF3A-208ENST00000484246 TAS1R1Q7RTX1 841 aa17.24■□□□□ 0.35
UPF3A-208ENST00000484246 BEST2Q8NFU1 509 aa17.24■□□□□ 0.35
UPF3A-208ENST00000484246 PIK3R5Q8WYR1 880 aa17.24■□□□□ 0.35
UPF3A-208ENST00000484246 RABGGTAQ92696 567 aa17.24■□□□□ 0.35
UPF3A-208ENST00000484246 DMAC2Q9NW81 257 aa17.24■□□□□ 0.35
UPF3A-208ENST00000484246 VCANP13611 3396 aa17.23■□□□□ 0.35
UPF3A-208ENST00000484246 ANO9A1A5B4 782 aa17.23■□□□□ 0.35
UPF3A-208ENST00000484246 CLASP2O75122 1294 aaKnown RBP17.23■□□□□ 0.35
UPF3A-208ENST00000484246 TBX10O75333 385 aa17.23■□□□□ 0.35
UPF3A-208ENST00000484246 FGFR3P22607 806 aa17.23■□□□□ 0.35
UPF3A-208ENST00000484246 GTF2F1P35269 517 aaKnown RBP eCLIP17.23■□□□□ 0.352e-6■■■■□ 26
UPF3A-208ENST00000484246 SURF1Q15526 300 aa17.23■□□□□ 0.35
UPF3A-208ENST00000484246 PDXDC1Q6P996 788 aa17.23■□□□□ 0.35
UPF3A-208ENST00000484246 PPFIBP1Q86W92 1011 aa17.23■□□□□ 0.35
UPF3A-208ENST00000484246 EFCAB13Q8IY85 973 aa17.23■□□□□ 0.35
UPF3A-208ENST00000484246 XXYLT1Q8NBI6 393 aa17.23■□□□□ 0.35
UPF3A-208ENST00000484246 ZSWIM2Q8NEG5 633 aa17.23■□□□□ 0.35
UPF3A-208ENST00000484246 VN1R2Q8NFZ6 395 aa17.23■□□□□ 0.35
UPF3A-208ENST00000484246 TTPALQ9BTX7 342 aa17.23■□□□□ 0.35
UPF3A-208ENST00000484246 EMILIN2Q9BXX0 1053 aa17.23■□□□□ 0.35
UPF3A-208ENST00000484246 FNIP2Q9P278 1114 aa17.23■□□□□ 0.35
UPF3A-208ENST00000484246 TRAF3IP3Q9Y228 551 aa17.23■□□□□ 0.35
UPF3A-208ENST00000484246 PCDHA5Q9Y5H7 936 aa17.23■□□□□ 0.35
UPF3A-208ENST00000484246 EYSQ5T1H1 3165 aa17.22■□□□□ 0.35
UPF3A-208ENST00000484246 TDRD15B5MCY1 1934 aaKnown RBP17.22■□□□□ 0.35
UPF3A-208ENST00000484246 ZNF233A6NK53 670 aa17.22■□□□□ 0.35
UPF3A-208ENST00000484246 SYN3O14994 580 aa17.22■□□□□ 0.35
UPF3A-208ENST00000484246 CNPP09543 421 aaKnown RBP17.22■□□□□ 0.35
UPF3A-208ENST00000484246 SRGAP2BP0DMP2 458 aa17.22■□□□□ 0.35
UPF3A-208ENST00000484246 WNT7BP56706 349 aa17.22■□□□□ 0.35
UPF3A-208ENST00000484246 MRPS5P82675 430 aaKnown RBP17.22■□□□□ 0.35
UPF3A-208ENST00000484246 SPAG1Q07617 926 aa17.22■□□□□ 0.35
UPF3A-208ENST00000484246 ZCWPW2Q504Y3 356 aa17.22■□□□□ 0.35
UPF3A-208ENST00000484246 RTP2Q5QGT7 225 aa17.22■□□□□ 0.35
UPF3A-208ENST00000484246 FAM171A1Q5VUB5 890 aa17.22■□□□□ 0.35
UPF3A-208ENST00000484246 CBWD2Q8IUF1 395 aa17.22■□□□□ 0.35
UPF3A-208ENST00000484246 HASPINQ8TF76 798 aa17.22■□□□□ 0.35
UPF3A-208ENST00000484246 SLC22A17Q8WUG5 538 aa17.22■□□□□ 0.35
UPF3A-208ENST00000484246 AUTS2Q8WXX7 1259 aa17.22■□□□□ 0.35
UPF3A-208ENST00000484246 SMARCE1Q969G3 411 aa17.22■□□□□ 0.35
UPF3A-208ENST00000484246 MSLNLQ96KJ4 702 aa17.22■□□□□ 0.35
UPF3A-208ENST00000484246 SUSD3Q96L08 255 aa17.22■□□□□ 0.35
UPF3A-208ENST00000484246 KLHL5Q96PQ7 755 aa17.22■□□□□ 0.35
UPF3A-208ENST00000484246 PCIF1Q9H4Z3 704 aa17.22■□□□□ 0.35
UPF3A-208ENST00000484246 CLDND1Q9NY35 253 aa17.22■□□□□ 0.35
UPF3A-208ENST00000484246 HCFC2Q9Y5Z7 792 aa17.22■□□□□ 0.35
UPF3A-208ENST00000484246 GOLGA8IPA6NC78 632 aa17.21■□□□□ 0.35
UPF3A-208ENST00000484246 GOLGA8JA6NMD2 632 aa17.21■□□□□ 0.35
UPF3A-208ENST00000484246 PIRO00625 290 aa17.21■□□□□ 0.35
UPF3A-208ENST00000484246 PER2O15055 1255 aa17.21■□□□□ 0.35
UPF3A-208ENST00000484246 LINC01565O15544 149 aa17.21■□□□□ 0.35
UPF3A-208ENST00000484246 ADH1AP07327 375 aa17.21■□□□□ 0.35
UPF3A-208ENST00000484246 IGFBP6P24592 240 aaPredicted RBP17.21■□□□□ 0.35
UPF3A-208ENST00000484246 SNRNP35Q16560 246 aaKnown RBP17.21■□□□□ 0.35
UPF3A-208ENST00000484246 PUS10Q3MIT2 529 aaKnown RBP17.21■□□□□ 0.35
UPF3A-208ENST00000484246 ZNF658Q5TYW1 1059 aaPredicted RBP17.21■□□□□ 0.35
UPF3A-208ENST00000484246 C9orf57Q5W0N0 161 aa17.21■□□□□ 0.35
UPF3A-208ENST00000484246 KIAA1841Q6NSI8 718 aa17.21■□□□□ 0.35
UPF3A-208ENST00000484246 RBM23Q86U06 439 aaKnown RBP17.21■□□□□ 0.35
UPF3A-208ENST00000484246 CASP10Q92851 521 aa17.21■□□□□ 0.35
UPF3A-208ENST00000484246 FAM212AQ96EL1 285 aa17.21■□□□□ 0.35
UPF3A-208ENST00000484246 GBP4Q96PP9 640 aa17.21■□□□□ 0.35
UPF3A-208ENST00000484246 ASB2Q96Q27 587 aa17.21■□□□□ 0.35
UPF3A-208ENST00000484246 CLEC1BQ9P126 229 aa17.21■□□□□ 0.35
UPF3A-208ENST00000484246 M0QZQ0 153 aa17.2■□□□□ 0.34
UPF3A-208ENST00000484246 TEX28O15482 410 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms