RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 GPRC5BQ9NZH0 403 aa7.71□□□□□ -1.18
USP40-213ENST00000483216 FZD1Q9UP38 647 aa7.71□□□□□ -1.18
USP40-213ENST00000483216 NPIPB8E9PQR5 432 aa7.7□□□□□ -1.18
USP40-213ENST00000483216 NARSO43776 548 aaKnown RBP7.7□□□□□ -1.18
USP40-213ENST00000483216 HAUS5O94927 633 aa7.7□□□□□ -1.18
USP40-213ENST00000483216 CKBP12277 381 aa7.7□□□□□ -1.18
USP40-213ENST00000483216 HK3P52790 923 aa7.7□□□□□ -1.18
USP40-213ENST00000483216 FAM189BP81408 668 aa7.7□□□□□ -1.18
USP40-213ENST00000483216 ZXDAP98168 799 aa7.7□□□□□ -1.18
USP40-213ENST00000483216 SNAPC2Q13487 334 aa7.7□□□□□ -1.18
USP40-213ENST00000483216 GTF2H3Q13889 308 aa7.7□□□□□ -1.18
USP40-213ENST00000483216 IFIT1BQ5T764 474 aaKnown RBP7.7□□□□□ -1.18
USP40-213ENST00000483216 TPH2Q8IWU9 490 aa7.7□□□□□ -1.18
USP40-213ENST00000483216 Q8N1X5 172 aa7.7□□□□□ -1.18
USP40-213ENST00000483216 OR56A1Q8NGH5 318 aa7.7□□□□□ -1.18
USP40-213ENST00000483216 ZNF483Q8TF39 744 aaPredicted RBP7.7□□□□□ -1.18
USP40-213ENST00000483216 HAS1Q92839 578 aa7.7□□□□□ -1.18
USP40-213ENST00000483216 RGMAQ96B86 450 aa7.7□□□□□ -1.18
USP40-213ENST00000483216 MAP3K14Q99558 947 aa7.7□□□□□ -1.18
USP40-213ENST00000483216 KMT5AQ9NQR1 393 aa7.7□□□□□ -1.18
USP40-213ENST00000483216 SLC2A4RGQ9NR83 387 aa7.7□□□□□ -1.18
USP40-213ENST00000483216 KLHL11Q9NVR0 708 aa7.7□□□□□ -1.18
USP40-213ENST00000483216 SIDT1Q9NXL6 827 aaKnown RBP7.7□□□□□ -1.18
USP40-213ENST00000483216 NT5C1B-RDH14C9J2C7 533 aa7.69□□□□□ -1.18
USP40-213ENST00000483216 FZD7O75084 574 aa7.69□□□□□ -1.18
USP40-213ENST00000483216 SLC43A1O75387 559 aa7.69□□□□□ -1.18
USP40-213ENST00000483216 CD1AP06126 327 aa7.69□□□□□ -1.18
USP40-213ENST00000483216 SBK3P0C264 359 aa7.69□□□□□ -1.18
USP40-213ENST00000483216 FTH1P19P0C7X4 201 aa7.69□□□□□ -1.18
USP40-213ENST00000483216 ZFP36P26651 326 aaKnown RBP7.69□□□□□ -1.18
USP40-213ENST00000483216 SLC6A4P31645 630 aa7.69□□□□□ -1.18
USP40-213ENST00000483216 PPP2R5AQ15172 486 aa7.69□□□□□ -1.18
USP40-213ENST00000483216 TSHZ3Q63HK5 1081 aa7.69□□□□□ -1.18
USP40-213ENST00000483216 SLC4A10Q6U841 1118 aa7.69□□□□□ -1.18
USP40-213ENST00000483216 RHOUQ7L0Q8 258 aa7.69□□□□□ -1.18
USP40-213ENST00000483216 CHPFQ8IZ52 775 aa7.69□□□□□ -1.18
USP40-213ENST00000483216 NUP133Q8WUM0 1156 aa7.69□□□□□ -1.18
USP40-213ENST00000483216 MYEOVQ96EZ4 313 aa7.69□□□□□ -1.18
USP40-213ENST00000483216 TEX101Q9BY14 249 aa7.69□□□□□ -1.18
USP40-213ENST00000483216 AKIP1Q9NQ31 210 aa7.69□□□□□ -1.18
USP40-213ENST00000483216 JKAMPQ9P055 326 aa7.69□□□□□ -1.18
USP40-213ENST00000483216 TCEAL9Q9UHQ7 104 aa7.69□□□□□ -1.18
USP40-213ENST00000483216 LRRC14BA6NHZ5 514 aa7.68□□□□□ -1.18
USP40-213ENST00000483216 F2RL2O00254 374 aa7.68□□□□□ -1.18
USP40-213ENST00000483216 NCR1O76036 304 aa7.68□□□□□ -1.18
USP40-213ENST00000483216 PRSS23O95084 383 aa7.68□□□□□ -1.18
USP40-213ENST00000483216 ZNF202O95125 648 aa7.68□□□□□ -1.18
USP40-213ENST00000483216 FTLP02792 175 aaPredicted RBP7.68□□□□□ -1.18
USP40-213ENST00000483216 U2AF1L5P0DN76 240 aaPredicted RBP7.68□□□□□ -1.18
USP40-213ENST00000483216 HSPA6P17066 643 aa7.68□□□□□ -1.18
USP40-213ENST00000483216 LAG3P18627 525 aa7.68□□□□□ -1.18
USP40-213ENST00000483216 MAP2K6P52564 334 aa7.68□□□□□ -1.18
USP40-213ENST00000483216 U2AF1Q01081 240 aaKnown RBP eCLIP7.68□□□□□ -1.18
USP40-213ENST00000483216 NOGQ13253 232 aa7.68□□□□□ -1.18
USP40-213ENST00000483216 BEAN1Q3B7T3 259 aa7.68□□□□□ -1.18
USP40-213ENST00000483216 IGFL4Q6B9Z1 124 aa7.68□□□□□ -1.18
USP40-213ENST00000483216 CXorf57Q6NSI4 855 aaKnown RBP7.68□□□□□ -1.18
USP40-213ENST00000483216 SYNE4Q8N205 404 aa7.68□□□□□ -1.18
USP40-213ENST00000483216 C1GALT1C1Q96EU7 318 aa7.68□□□□□ -1.18
USP40-213ENST00000483216 PACSIN1Q9BY11 444 aa7.68□□□□□ -1.18
USP40-213ENST00000483216 RNPEPQ9H4A4 650 aa7.68□□□□□ -1.18
USP40-213ENST00000483216 NRDE2Q9H7Z3 1164 aa7.68□□□□□ -1.18
USP40-213ENST00000483216 NMRK2Q9NPI5 230 aa7.68□□□□□ -1.18
USP40-213ENST00000483216 DKK2Q9UBU2 259 aa7.68□□□□□ -1.18
USP40-213ENST00000483216 G3BP2Q9UN86 482 aaKnown RBP7.68□□□□□ -1.18
USP40-213ENST00000483216 FPGT-TNNI3KV9GXZ4 949 aa7.68□□□□□ -1.18
USP40-213ENST00000483216 CDHR4A6H8M9 788 aa7.67□□□□□ -1.18
USP40-213ENST00000483216 TMEM200CA6NKL6 621 aa7.67□□□□□ -1.18
USP40-213ENST00000483216 MARCH11A6NNE9 402 aa7.67□□□□□ -1.18
USP40-213ENST00000483216 AP1G1O43747 822 aa7.67□□□□□ -1.18
USP40-213ENST00000483216 SCGB1D2O95969 90 aa7.67□□□□□ -1.18
USP40-213ENST00000483216 CFIP05156 583 aa7.67□□□□□ -1.18
USP40-213ENST00000483216 MAKP20794 623 aa7.67□□□□□ -1.18
USP40-213ENST00000483216 LPOP22079 712 aaPredicted RBP7.67□□□□□ -1.18
USP40-213ENST00000483216 SMARCA1P28370 1054 aa7.67□□□□□ -1.18
USP40-213ENST00000483216 BMPR1AP36894 532 aa7.67□□□□□ -1.18
USP40-213ENST00000483216 FAM102BQ5T8I3 360 aa7.67□□□□□ -1.18
USP40-213ENST00000483216 B3GNT9Q6UX72 402 aa7.67□□□□□ -1.18
USP40-213ENST00000483216 LRRC55Q6ZSA7 311 aa7.67□□□□□ -1.18
USP40-213ENST00000483216 EPM2AIP1Q7L775 607 aaPredicted RBP7.67□□□□□ -1.18
USP40-213ENST00000483216 MRGPREQ86SM8 312 aa7.67□□□□□ -1.18
USP40-213ENST00000483216 FAM167AQ96KS9 214 aa7.67□□□□□ -1.18
USP40-213ENST00000483216 WDCPQ9H6R7 721 aa7.67□□□□□ -1.18
USP40-213ENST00000483216 MMRN2Q9H8L6 949 aa7.67□□□□□ -1.18
USP40-213ENST00000483216 METTL14Q9HCE5 456 aaKnown RBP7.67□□□□□ -1.18
USP40-213ENST00000483216 GNL3LQ9NVN8 582 aaKnown RBP7.67□□□□□ -1.18
USP40-213ENST00000483216 REXO2Q9Y3B8 237 aaKnown RBP7.67□□□□□ -1.18
USP40-213ENST00000483216 PCDHA3Q9Y5H8 950 aa7.67□□□□□ -1.18
USP40-213ENST00000483216 A0A1B0GTW7 788 aa7.66□□□□□ -1.18
USP40-213ENST00000483216 HLA-DOAP06340 250 aa7.66□□□□□ -1.18
USP40-213ENST00000483216 MCM7P33993 719 aa7.66□□□□□ -1.18
USP40-213ENST00000483216 NOMO3P69849 1222 aa7.66□□□□□ -1.18
USP40-213ENST00000483216 ZNF267Q14586 743 aaPredicted RBP7.66□□□□□ -1.18
USP40-213ENST00000483216 LRRC41Q15345 812 aa7.66□□□□□ -1.18
USP40-213ENST00000483216 FLYWCH1Q4VC44 716 aa7.66□□□□□ -1.18
USP40-213ENST00000483216 NOMO2Q5JPE7 1267 aa7.66□□□□□ -1.18
USP40-213ENST00000483216 UTP14CQ5TAP6 766 aaKnown RBP7.66□□□□□ -1.18
USP40-213ENST00000483216 NXNQ6DKJ4 435 aa7.66□□□□□ -1.18
USP40-213ENST00000483216 ARMC6Q6NXE6 501 aa7.66□□□□□ -1.18
USP40-213ENST00000483216 ZNF365Q70YC5 407 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms