RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 FAM43BQ6ZT52 329 aaPredicted RBP7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 FAM181AQ8N9Y4 354 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 BHLHE22Q8NFJ8 381 aaPredicted RBP7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 NETO1Q8TDF5 533 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 SNX29Q8TEQ0 813 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 WASF1Q92558 559 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 IL17RAQ96F46 866 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 FAM167AQ96KS9 214 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 AIFM3Q96NN9 605 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 SAMD11Q96NU1 681 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 RIT2Q99578 217 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 TEKT3Q9BXF9 490 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 FTHL17Q9BXU8 183 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 CELF4Q9BZC1 486 aaKnown RBP7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 CLEC4MQ9H2X3 399 aaPredicted RBP7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 LMCD1Q9NZU5 365 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 GABBR1Q9UBS5 961 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 VAV3Q9UKW4 847 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 MTUS1Q9ULD2 1270 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 TPCN1Q9ULQ1 816 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 CEP131Q9UPN4 1083 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 IGSF9BQ9UPX0 1349 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 KDM3AQ9Y4C1 1321 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 KIAA1671Q9BY89 1806 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 ATG2AQ2TAZ0 1938 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 CUL9Q8IWT3 2517 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 CYP3A7-CYP3A51PA0A087WV96 503 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 CCDC194A0A1B0GVG4 234 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 ENPP3O14638 875 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 MAGEB2O15479 319 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 EDIL3O43854 480 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 LPXNO60711 386 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 CYP3A7P24462 503 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 MPSTP25325 297 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 CD52P31358 61 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 GRIA4P48058 902 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 AK2P54819 239 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 PAK2Q13177 524 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 NPY5RQ15761 445 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 AAK1Q2M2I8 961 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 SPRED3Q2MJR0 410 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 FNDC1Q4ZHG4 1894 aaPredicted RBP7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 ODR4Q5SWX8 454 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 KRT40Q6A162 431 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 CCNJLQ8IV13 435 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 ADGRA3Q8IWK6 1321 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 KIAA0319LQ8IZA0 1049 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 RDM1Q8NG50 284 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 SLC5A5Q92911 643 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 ASB2Q96Q27 587 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 TCF12Q99081 682 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 C17orf80Q9BSJ5 609 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 PHF20Q9BVI0 1012 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 AGO3Q9H9G7 860 aaKnown RBP7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 DISC1Q9NRI5 854 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 KCNJ14Q9UNX9 436 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 AP4E1Q9UPM8 1137 aa7.65□□□□□ -1.18
CCDC88A-213ENST00000476903 XIRP2A4UGR9 3374 aa7.65□□□□□ -1.19
CCDC88A-213ENST00000476903 BRWD1Q9NSI6 2320 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 CHMP2AO43633 222 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 PSMD10O75832 226 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 TDP2O95551 362 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 C22orf31O95567 290 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 GCFC2P16383 781 aaKnown RBP7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 TMOD1P28289 359 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 NEK4P51957 841 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 PRKCEQ02156 737 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 PRKCQQ04759 706 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 PTPROQ16827 1216 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 INF2Q27J81 1249 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 CYP27C1Q4G0S4 372 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 EPC2Q52LR7 807 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 TRMT1LQ7Z2T5 733 aaKnown RBP7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 MIER3Q7Z3K6 550 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 NEK8Q86SG6 692 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 TMEM192Q8IY95 271 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 FIBCD1Q8N539 461 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 METTL13Q8N6R0 699 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 ETNPPLQ8TBG4 499 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 GTF3C6Q969F1 213 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 FAM84AQ96KN4 292 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 MBOAT7Q96N66 472 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 NAP1L4Q99733 375 aaKnown RBP7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 KRTAP9-3Q9BYQ3 159 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 UNC45AQ9H3U1 944 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 NRBP2Q9NSY0 501 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 ORC3Q9UBD5 711 aaPredicted RBP7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 DDX25Q9UHL0 483 aaKnown RBP7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 PADI3Q9ULW8 664 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 COG5Q9UP83 839 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 GINS2Q9Y248 185 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 RWDD3Q9Y3V2 267 aa7.64□□□□□ -1.19
CCDC88A-213ENST00000476903 C5orf67F2Z3F1 127 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 H3BNC9 293 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 GPR182O15218 404 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 ZNF862O60290 1169 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 RPS6KA5O75582 802 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 DGKIO75912 1065 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 CTDNEP1O95476 244 aa7.63□□□□□ -1.19
CCDC88A-213ENST00000476903 VTNP04004 478 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms