RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 TMC2Q8TDI7 906 aa16.01■□□□□ 0.15
COL9A3-209ENST00000469852 RSPH1Q8WYR4 309 aa16.01■□□□□ 0.15
COL9A3-209ENST00000469852 CNOT6LQ96LI5 555 aaKnown RBP16.01■□□□□ 0.15
COL9A3-209ENST00000469852 CERS4Q9HA82 394 aa16.01■□□□□ 0.15
COL9A3-209ENST00000469852 CBX8Q9HC52 389 aa16.01■□□□□ 0.15
COL9A3-209ENST00000469852 INTS13Q9NVM9 706 aa16.01■□□□□ 0.15
COL9A3-209ENST00000469852 MTUS1Q9ULD2 1270 aa16.01■□□□□ 0.15
COL9A3-209ENST00000469852 UBQLN1Q9UMX0 589 aaKnown RBP16.01■□□□□ 0.15
COL9A3-209ENST00000469852 PRG3Q9Y2Y8 225 aaPredicted RBP16.01■□□□□ 0.15
COL9A3-209ENST00000469852 DERAQ9Y315 318 aa16.01■□□□□ 0.15
COL9A3-209ENST00000469852 SCN1AP35498 2009 aa16.01■□□□□ 0.15
COL9A3-209ENST00000469852 UNC80Q8N2C7 3258 aa16■□□□□ 0.15
COL9A3-209ENST00000469852 NRP1O14786 923 aa16■□□□□ 0.15
COL9A3-209ENST00000469852 ITGB1P05556 798 aa16■□□□□ 0.15
COL9A3-209ENST00000469852 TNNI1P19237 187 aa16■□□□□ 0.15
COL9A3-209ENST00000469852 OR1G1P47890 313 aa16■□□□□ 0.15
COL9A3-209ENST00000469852 ZNF445P59923 1031 aa16■□□□□ 0.15
COL9A3-209ENST00000469852 CLDN10P78369 228 aa16■□□□□ 0.15
COL9A3-209ENST00000469852 MYL5Q02045 173 aa16■□□□□ 0.15
COL9A3-209ENST00000469852 TPD52L1Q16890 204 aaPredicted RBP16■□□□□ 0.15
COL9A3-209ENST00000469852 CCDC40Q4G0X9 1142 aa16■□□□□ 0.15
COL9A3-209ENST00000469852 CDKAL1Q5VV42 579 aa16■□□□□ 0.15
COL9A3-209ENST00000469852 PPP2R2DQ66LE6 453 aa16■□□□□ 0.15
COL9A3-209ENST00000469852 KCNT2Q6UVM3 1135 aa16■□□□□ 0.15
COL9A3-209ENST00000469852 CD300LGQ6UXG3 332 aa16■□□□□ 0.15
COL9A3-209ENST00000469852 WDR49Q8IV35 697 aa16■□□□□ 0.15
COL9A3-209ENST00000469852 C1orf127Q8N9H9 656 aa16■□□□□ 0.15
COL9A3-209ENST00000469852 TIFAQ96CG3 184 aa16■□□□□ 0.15
COL9A3-209ENST00000469852 FAM193BQ96PV7 902 aaPredicted RBP16■□□□□ 0.15
COL9A3-209ENST00000469852 FNBP1Q96RU3 617 aa16■□□□□ 0.15
COL9A3-209ENST00000469852 BPIFA3Q9BQP9 254 aa16■□□□□ 0.15
COL9A3-209ENST00000469852 THAP9Q9H5L6 903 aa16■□□□□ 0.15
COL9A3-209ENST00000469852 SLC38A7Q9NVC3 462 aa16■□□□□ 0.15
COL9A3-209ENST00000469852 FANCLQ9NW38 375 aa16■□□□□ 0.15
COL9A3-209ENST00000469852 MARCH5Q9NX47 278 aa16■□□□□ 0.15
COL9A3-209ENST00000469852 ARMCX3Q9UH62 379 aaPredicted RBP16■□□□□ 0.15
COL9A3-209ENST00000469852 SIX4Q9UIU6 781 aa16■□□□□ 0.15
COL9A3-209ENST00000469852 COL4A4P53420 1690 aaPredicted RBP15.99■□□□□ 0.15
COL9A3-209ENST00000469852 CUL9Q8IWT3 2517 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 EPOPA6NHQ4 379 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 PODXLO00592 558 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 KIF4AO95239 1232 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 TMEM191BP0C7N4 346 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 KRT13P13646 458 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 LAG3P18627 525 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 CYP3A5P20815 502 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 LRPAP1P30533 357 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 CTNNB1P35222 781 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 MARSP56192 900 aaKnown RBP15.99■□□□□ 0.15
COL9A3-209ENST00000469852 SURF1Q15526 300 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 UPP1Q16831 310 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 DCAF17Q5H9S7 520 aaPredicted RBP15.99■□□□□ 0.15
COL9A3-209ENST00000469852 TDRD10Q5VZ19 366 aaKnown RBP15.99■□□□□ 0.15
COL9A3-209ENST00000469852 FRMD5Q7Z6J6 570 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 TRIM59Q8IWR1 403 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 SLC39A11Q8N1S5 342 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 BEST2Q8NFU1 509 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 HASPINQ8TF76 798 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 SLC35C1Q96A29 364 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 FAM161BQ96MY7 647 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 ZNF558Q96NG5 402 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 TMEM175Q9BSA9 504 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 TSPY26PQ9H489 355 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 MMRN2Q9H8L6 949 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 DPP3Q9NY33 737 aa15.99■□□□□ 0.15
COL9A3-209ENST00000469852 ANO9A1A5B4 782 aa15.98■□□□□ 0.15
COL9A3-209ENST00000469852 IKBKBO14920 756 aa15.98■□□□□ 0.15
COL9A3-209ENST00000469852 VNN1O95497 513 aa15.98■□□□□ 0.15
COL9A3-209ENST00000469852 C4BPAP04003 597 aaKnown RBP15.98■□□□□ 0.15
COL9A3-209ENST00000469852 ITGB3P05106 788 aa15.98■□□□□ 0.15
COL9A3-209ENST00000469852 BMPR1AP36894 532 aa15.98■□□□□ 0.15
COL9A3-209ENST00000469852 GCLMP48507 274 aa15.98■□□□□ 0.15
COL9A3-209ENST00000469852 ERVK-21P61565 698 aa15.98■□□□□ 0.15
COL9A3-209ENST00000469852 HSP90AA2PQ14568 343 aaPredicted RBP15.98■□□□□ 0.15
COL9A3-209ENST00000469852 EPC2Q52LR7 807 aa15.98■□□□□ 0.15
COL9A3-209ENST00000469852 TCERG1LQ5VWI1 586 aa15.98■□□□□ 0.15
COL9A3-209ENST00000469852 C9orf57Q5W0N0 161 aa15.98■□□□□ 0.15
COL9A3-209ENST00000469852 C15orf39Q6ZRI6 1047 aa15.98■□□□□ 0.15
COL9A3-209ENST00000469852 TRAPPC11Q7Z392 1133 aa15.98■□□□□ 0.15
COL9A3-209ENST00000469852 LUZP1Q86V48 1076 aa15.98■□□□□ 0.15
COL9A3-209ENST00000469852 NT5DC4Q86YG4 428 aa15.98■□□□□ 0.15
COL9A3-209ENST00000469852 ELMO3Q96BJ8 720 aa15.98■□□□□ 0.15
COL9A3-209ENST00000469852 ANKRD36BP1Q96IX9 119 aa15.98■□□□□ 0.15
COL9A3-209ENST00000469852 TGS1Q96RS0 853 aaKnown RBP15.98■□□□□ 0.15
COL9A3-209ENST00000469852 TSPAN18Q96SJ8 248 aa15.98■□□□□ 0.15
COL9A3-209ENST00000469852 VN1R3Q9BXE9 311 aa15.98■□□□□ 0.15
COL9A3-209ENST00000469852 NAT10Q9H0A0 1025 aaKnown RBP15.98■□□□□ 0.15
COL9A3-209ENST00000469852 TTYH1Q9H313 450 aaPredicted RBP15.98■□□□□ 0.15
COL9A3-209ENST00000469852 SLC28A3Q9HAS3 691 aa15.98■□□□□ 0.15
COL9A3-209ENST00000469852 FAN1Q9Y2M0 1017 aa15.98■□□□□ 0.15
COL9A3-209ENST00000469852 ATG2AQ2TAZ0 1938 aa15.98■□□□□ 0.15
COL9A3-209ENST00000469852 KCNJ18B7U540 433 aa15.97■□□□□ 0.15
COL9A3-209ENST00000469852 SPTLC1O15269 473 aa15.97■□□□□ 0.15
COL9A3-209ENST00000469852 LRRN2O75325 713 aa15.97■□□□□ 0.15
COL9A3-209ENST00000469852 FGFR1OPO95684 399 aaKnown RBP15.97■□□□□ 0.15
COL9A3-209ENST00000469852 GNA14O95837 355 aa15.97■□□□□ 0.15
COL9A3-209ENST00000469852 CST3P01034 146 aaPredicted RBP15.97■□□□□ 0.15
COL9A3-209ENST00000469852 ALDH2P05091 517 aa15.97■□□□□ 0.15
COL9A3-209ENST00000469852 ZNF18P17022 549 aa15.97■□□□□ 0.15
COL9A3-209ENST00000469852 POLR2BP30876 1174 aaKnown RBP15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms