RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 KIAA0319Q5VV43 1072 aa12.65□□□□□ -0.38
CUX1-207ENST00000465461 SPATA1Q5VX52 437 aa12.65□□□□□ -0.38
CUX1-207ENST00000465461 HS2ST1Q7LGA3 356 aa12.65□□□□□ -0.38
CUX1-207ENST00000465461 BRSK2Q8IWQ3 736 aa12.65□□□□□ -0.38
CUX1-207ENST00000465461 CD302Q8IX05 232 aa12.65□□□□□ -0.38
CUX1-207ENST00000465461 SPATA20Q8TB22 786 aa12.65□□□□□ -0.38
CUX1-207ENST00000465461 RIN2Q8WYP3 895 aaPredicted RBP12.65□□□□□ -0.38
CUX1-207ENST00000465461 UROC1Q96N76 676 aa12.65□□□□□ -0.38
CUX1-207ENST00000465461 GBP4Q96PP9 640 aa12.65□□□□□ -0.38
CUX1-207ENST00000465461 GSDMAQ96QA5 445 aa12.65□□□□□ -0.38
CUX1-207ENST00000465461 POP1Q99575 1024 aaKnown RBP12.65□□□□□ -0.38
CUX1-207ENST00000465461 ASB7Q9H672 318 aa12.65□□□□□ -0.38
CUX1-207ENST00000465461 NGRNQ9NPE2 291 aaKnown RBP12.65□□□□□ -0.38
CUX1-207ENST00000465461 UBQLN1Q9UMX0 589 aaKnown RBP12.65□□□□□ -0.38
CUX1-207ENST00000465461 PTPRJQ12913 1337 aa12.64□□□□□ -0.39
CUX1-207ENST00000465461 ZNF233A6NK53 670 aa12.64□□□□□ -0.39
CUX1-207ENST00000465461 H3BQ06 376 aaPredicted RBP12.64□□□□□ -0.39
CUX1-207ENST00000465461 EXOC3O60645 756 aa12.64□□□□□ -0.39
CUX1-207ENST00000465461 LILRB3O75022 631 aa12.64□□□□□ -0.39
CUX1-207ENST00000465461 GLP2RO95838 553 aa12.64□□□□□ -0.39
CUX1-207ENST00000465461 URODP06132 367 aa12.64□□□□□ -0.39
CUX1-207ENST00000465461 CNPP09543 421 aaKnown RBP12.64□□□□□ -0.39
CUX1-207ENST00000465461 BMP6P22004 513 aa12.64□□□□□ -0.39
CUX1-207ENST00000465461 TKTP29401 623 aaKnown RBP12.64□□□□□ -0.39
CUX1-207ENST00000465461 LTBRP36941 435 aa12.64□□□□□ -0.39
CUX1-207ENST00000465461 GLUD2P49448 558 aa12.64□□□□□ -0.39
CUX1-207ENST00000465461 CASP4P49662 377 aa12.64□□□□□ -0.39
CUX1-207ENST00000465461 TFAMQ00059 246 aaKnown RBP12.64□□□□□ -0.39
CUX1-207ENST00000465461 CLUL1Q15846 466 aa12.64□□□□□ -0.39
CUX1-207ENST00000465461 SNRNP35Q16560 246 aaKnown RBP12.64□□□□□ -0.39
CUX1-207ENST00000465461 DUSP6Q16828 381 aa12.64□□□□□ -0.39
CUX1-207ENST00000465461 ZNF658Q5TYW1 1059 aaPredicted RBP12.64□□□□□ -0.39
CUX1-207ENST00000465461 PDE12Q6L8Q7 609 aaKnown RBP12.64□□□□□ -0.39
CUX1-207ENST00000465461 KIAA1841Q6NSI8 718 aa12.64□□□□□ -0.39
CUX1-207ENST00000465461 XXYLT1Q8NBI6 393 aa12.64□□□□□ -0.39
CUX1-207ENST00000465461 BEST2Q8NFU1 509 aa12.64□□□□□ -0.39
CUX1-207ENST00000465461 HLA-CQ95604 372 aa12.64□□□□□ -0.39
CUX1-207ENST00000465461 EEF2KMTQ96G04 330 aa12.64□□□□□ -0.39
CUX1-207ENST00000465461 DDX27Q96GQ7 796 aaKnown RBP12.64□□□□□ -0.39
CUX1-207ENST00000465461 KLHL5Q96PQ7 755 aa12.64□□□□□ -0.39
CUX1-207ENST00000465461 MRPL17Q9NRX2 175 aaKnown RBP12.64□□□□□ -0.39
CUX1-207ENST00000465461 CHST7Q9NS84 486 aa12.64□□□□□ -0.39
CUX1-207ENST00000465461 RMND1Q9NWS8 449 aa12.64□□□□□ -0.39
CUX1-207ENST00000465461 DPP3Q9NY33 737 aa12.64□□□□□ -0.39
CUX1-207ENST00000465461 HOOK1Q9UJC3 728 aaKnown RBP12.64□□□□□ -0.39
CUX1-207ENST00000465461 BARX2Q9UMQ3 279 aaPredicted RBP12.64□□□□□ -0.39
CUX1-207ENST00000465461 NUB1Q9Y5A7 615 aa12.64□□□□□ -0.39
CUX1-207ENST00000465461 SF3B1O75533 1304 aaKnown RBP eCLIP12.63□□□□□ -0.392e-6■■■■■ 43.1
CUX1-207ENST00000465461 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.63□□□□□ -0.39
CUX1-207ENST00000465461 CARNS1A5YM72 827 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 TMEM189-UBE2V1I3L0A0 370 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 PDXKO00764 312 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 CALUO43852 315 aaPredicted RBP12.63□□□□□ -0.39
CUX1-207ENST00000465461 TBX10O75333 385 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 IL18RAPO95256 599 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 NR3C1P04150 777 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 CD44P16070 742 aaKnown RBP12.63□□□□□ -0.39
CUX1-207ENST00000465461 CYP3A5P20815 502 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 KCNA5P22460 613 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 LRPAP1P30533 357 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 RPL9P32969 192 aaKnown RBP12.63□□□□□ -0.39
CUX1-207ENST00000465461 MCM4P33991 863 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 PMS1P54277 932 aaKnown RBP12.63□□□□□ -0.39
CUX1-207ENST00000465461 DSG1Q02413 1049 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 ADAM15Q13444 863 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 USP41Q3LFD5 358 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 C9orf57Q5W0N0 161 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 CEP135Q66GS9 1140 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 ELOA2Q8IYF1 753 aaPredicted RBP12.63□□□□□ -0.39
CUX1-207ENST00000465461 GUF1Q8N442 669 aaKnown RBP12.63□□□□□ -0.39
CUX1-207ENST00000465461 OR5B17Q8NGF7 314 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 FEZF2Q8TBJ5 459 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 GPT2Q8TD30 523 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 PLEKHO2Q8TD55 490 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 CCDC127Q96BQ5 260 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 PABPC5Q96DU9 382 aaKnown RBP12.63□□□□□ -0.39
CUX1-207ENST00000465461 FBXL18Q96ME1 805 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 APOL5Q9BWW9 433 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 UBE2ZQ9H832 354 aaPredicted RBP12.63□□□□□ -0.39
CUX1-207ENST00000465461 DMAC2Q9NW81 257 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 TIMM13Q9Y5L4 95 aaPredicted RBP12.63□□□□□ -0.39
CUX1-207ENST00000465461 EYSQ5T1H1 3165 aa12.63□□□□□ -0.39
CUX1-207ENST00000465461 VWA8A3KMH1 1905 aa12.62□□□□□ -0.39
CUX1-207ENST00000465461 TRIM49BA6NDI0 452 aa12.62□□□□□ -0.39
CUX1-207ENST00000465461 PIRO00625 290 aa12.62□□□□□ -0.39
CUX1-207ENST00000465461 KIAA0391O15091 583 aaKnown RBP12.62□□□□□ -0.39
CUX1-207ENST00000465461 SPTLC1O15269 473 aa12.62□□□□□ -0.39
CUX1-207ENST00000465461 TEX28O15482 410 aa12.62□□□□□ -0.39
CUX1-207ENST00000465461 ADAM12O43184 909 aa12.62□□□□□ -0.39
CUX1-207ENST00000465461 XPOTO43592 962 aaKnown RBP12.62□□□□□ -0.39
CUX1-207ENST00000465461 ITGB3P05106 788 aa12.62□□□□□ -0.39
CUX1-207ENST00000465461 SPATA31D3P0C874 917 aa12.62□□□□□ -0.39
CUX1-207ENST00000465461 DLATP10515 647 aaKnown RBP12.62□□□□□ -0.39
CUX1-207ENST00000465461 EPCAMP16422 314 aa12.62□□□□□ -0.39
CUX1-207ENST00000465461 FGFR3P22607 806 aa12.62□□□□□ -0.39
CUX1-207ENST00000465461 KLRC2P26717 231 aa12.62□□□□□ -0.39
CUX1-207ENST00000465461 NDUFV1P49821 464 aa12.62□□□□□ -0.39
CUX1-207ENST00000465461 KCNQ1P51787 676 aa12.62□□□□□ -0.39
CUX1-207ENST00000465461 SNRPFP62306 86 aaKnown RBP12.62□□□□□ -0.39
CUX1-207ENST00000465461 CYP24A1Q07973 514 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms