RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 KIAA1841Q6NSI8 718 aa24.77■■□□□ 1.56
CCDC28B-203ENST00000461819 RBM23Q86U06 439 aaKnown RBP24.77■■□□□ 1.56
CCDC28B-203ENST00000461819 RDH13Q8NBN7 331 aa24.77■■□□□ 1.56
CCDC28B-203ENST00000461819 GPR62Q9BZJ7 368 aa24.77■■□□□ 1.56
CCDC28B-203ENST00000461819 TLE6Q9H808 572 aa24.77■■□□□ 1.56
CCDC28B-203ENST00000461819 HIDE1A8MVS5 230 aa24.76■■□□□ 1.55
CCDC28B-203ENST00000461819 NR3C1P04150 777 aa24.76■■□□□ 1.55
CCDC28B-203ENST00000461819 NRIP1P48552 1158 aa24.76■■□□□ 1.55
CCDC28B-203ENST00000461819 GLUD2P49448 558 aa24.76■■□□□ 1.55
CCDC28B-203ENST00000461819 GUCY2FP51841 1108 aa24.76■■□□□ 1.55
CCDC28B-203ENST00000461819 ELAVL2Q12926 359 aaKnown RBP24.76■■□□□ 1.55
CCDC28B-203ENST00000461819 USP41Q3LFD5 358 aa24.76■■□□□ 1.55
CCDC28B-203ENST00000461819 SPATA1Q5VX52 437 aa24.76■■□□□ 1.55
CCDC28B-203ENST00000461819 TAS1R1Q7RTX1 841 aa24.76■■□□□ 1.55
CCDC28B-203ENST00000461819 NT5DC4Q86YG4 428 aa24.76■■□□□ 1.55
CCDC28B-203ENST00000461819 C3orf58Q8NDZ4 430 aa24.76■■□□□ 1.55
CCDC28B-203ENST00000461819 FBXL18Q96ME1 805 aa24.76■■□□□ 1.55
CCDC28B-203ENST00000461819 IGFLR1Q9H665 355 aa24.76■■□□□ 1.55
CCDC28B-203ENST00000461819 PDE11AQ9HCR9 933 aa24.76■■□□□ 1.55
CCDC28B-203ENST00000461819 MRPL17Q9NRX2 175 aaKnown RBP24.76■■□□□ 1.55
CCDC28B-203ENST00000461819 NUB1Q9Y5A7 615 aa24.76■■□□□ 1.55
CCDC28B-203ENST00000461819 PRUNE2Q8WUY3 3088 aa24.75■■□□□ 1.55
CCDC28B-203ENST00000461819 BIN1O00499 593 aa24.75■■□□□ 1.55
CCDC28B-203ENST00000461819 C2CD2LO14523 706 aa24.75■■□□□ 1.55
CCDC28B-203ENST00000461819 TRAPPC3O43617 180 aa24.75■■□□□ 1.55
CCDC28B-203ENST00000461819 LRPAP1P30533 357 aa24.75■■□□□ 1.55
CCDC28B-203ENST00000461819 PRCPP42785 496 aa24.75■■□□□ 1.55
CCDC28B-203ENST00000461819 TFAMQ00059 246 aaKnown RBP24.75■■□□□ 1.55
CCDC28B-203ENST00000461819 HYAL1Q12794 435 aa24.75■■□□□ 1.55
CCDC28B-203ENST00000461819 STIM1Q13586 685 aa24.75■■□□□ 1.55
CCDC28B-203ENST00000461819 SURF1Q15526 300 aa24.75■■□□□ 1.55
CCDC28B-203ENST00000461819 PTPN14Q15678 1187 aa24.75■■□□□ 1.55
CCDC28B-203ENST00000461819 FAM171A1Q5VUB5 890 aa24.75■■□□□ 1.55
CCDC28B-203ENST00000461819 EFCAB13Q8IY85 973 aa24.75■■□□□ 1.55
CCDC28B-203ENST00000461819 RNF168Q8IYW5 571 aaPredicted RBP24.75■■□□□ 1.55
CCDC28B-203ENST00000461819 TMEM130Q8N3G9 435 aa24.75■■□□□ 1.55
CCDC28B-203ENST00000461819 MRPL43Q8N983 215 aaKnown RBP24.75■■□□□ 1.55
CCDC28B-203ENST00000461819 B3GALT6Q96L58 329 aa24.75■■□□□ 1.55
CCDC28B-203ENST00000461819 CLSTN2Q9H4D0 955 aa24.75■■□□□ 1.55
CCDC28B-203ENST00000461819 TRAF3IP3Q9Y228 551 aa24.75■■□□□ 1.55
CCDC28B-203ENST00000461819 SSX2IPQ9Y2D8 614 aa24.75■■□□□ 1.55
CCDC28B-203ENST00000461819 C2orf71A6NGG8 1288 aa24.74■■□□□ 1.55
CCDC28B-203ENST00000461819 EFEMP2O95967 443 aa24.74■■□□□ 1.55
CCDC28B-203ENST00000461819 WNT7BP56706 349 aa24.74■■□□□ 1.55
CCDC28B-203ENST00000461819 EP400NLQ6ZTU2 488 aa24.74■■□□□ 1.55
CCDC28B-203ENST00000461819 CEP57Q86XR8 500 aa24.74■■□□□ 1.55
CCDC28B-203ENST00000461819 CACTINQ8WUQ7 758 aaKnown RBP24.74■■□□□ 1.55
CCDC28B-203ENST00000461819 PER2O15055 1255 aa24.73■■□□□ 1.55
CCDC28B-203ENST00000461819 IGFBP6P24592 240 aaPredicted RBP24.73■■□□□ 1.55
CCDC28B-203ENST00000461819 MCM4P33991 863 aa24.73■■□□□ 1.55
CCDC28B-203ENST00000461819 GTF2F1P35269 517 aaKnown RBP eCLIP24.73■■□□□ 1.55
CCDC28B-203ENST00000461819 CYP24A1Q07973 514 aa24.73■■□□□ 1.55
CCDC28B-203ENST00000461819 COBLL1Q53SF7 1204 aa24.73■■□□□ 1.55
CCDC28B-203ENST00000461819 SLC9A9Q8IVB4 645 aa24.73■■□□□ 1.55
CCDC28B-203ENST00000461819 FNBP1Q96RU3 617 aa24.73■■□□□ 1.55
CCDC28B-203ENST00000461819 NUP62CLQ9H1M0 184 aa24.73■■□□□ 1.55
CCDC28B-203ENST00000461819 DPP3Q9NY33 737 aa24.73■■□□□ 1.55
CCDC28B-203ENST00000461819 KIAA1468Q9P260 1216 aa24.73■■□□□ 1.55
CCDC28B-203ENST00000461819 IRAK3Q9Y616 596 aa24.73■■□□□ 1.55
CCDC28B-203ENST00000461819 FSD2A1L4K1 749 aa24.72■■□□□ 1.55
CCDC28B-203ENST00000461819 I3L4J1 428 aa24.72■■□□□ 1.55
CCDC28B-203ENST00000461819 NCK2O43639 380 aa24.72■■□□□ 1.55
CCDC28B-203ENST00000461819 TMEM191BP0C7N4 346 aa24.72■■□□□ 1.55
CCDC28B-203ENST00000461819 NR2F2P24468 414 aa24.72■■□□□ 1.55
CCDC28B-203ENST00000461819 BRCC3P46736 316 aa24.72■■□□□ 1.55
CCDC28B-203ENST00000461819 DSG1Q02413 1049 aa24.72■■□□□ 1.55
CCDC28B-203ENST00000461819 MYBPC2Q14324 1141 aa24.72■■□□□ 1.55
CCDC28B-203ENST00000461819 DUSP6Q16828 381 aa24.72■■□□□ 1.55
CCDC28B-203ENST00000461819 CEP135Q66GS9 1140 aa24.72■■□□□ 1.55
CCDC28B-203ENST00000461819 CD300LGQ6UXG3 332 aa24.72■■□□□ 1.55
CCDC28B-203ENST00000461819 PDZRN4Q6ZMN7 1036 aaPredicted RBP24.72■■□□□ 1.55
CCDC28B-203ENST00000461819 RIN2Q8WYP3 895 aaPredicted RBP24.72■■□□□ 1.55
CCDC28B-203ENST00000461819 CDCA3Q99618 268 aaPredicted RBP24.72■■□□□ 1.55
CCDC28B-203ENST00000461819 TSG101Q99816 390 aa24.72■■□□□ 1.55
CCDC28B-203ENST00000461819 TTPALQ9BTX7 342 aa24.72■■□□□ 1.55
CCDC28B-203ENST00000461819 EMILIN2Q9BXX0 1053 aa24.72■■□□□ 1.55
CCDC28B-203ENST00000461819 CHST7Q9NS84 486 aa24.72■■□□□ 1.55
CCDC28B-203ENST00000461819 DMAC2Q9NW81 257 aa24.72■■□□□ 1.55
CCDC28B-203ENST00000461819 CLDND1Q9NY35 253 aa24.72■■□□□ 1.55
CCDC28B-203ENST00000461819 FRMD4BQ9Y2L6 1034 aa24.72■■□□□ 1.55
CCDC28B-203ENST00000461819 SCN1AP35498 2009 aa24.72■■□□□ 1.55
CCDC28B-203ENST00000461819 PSMA7O14818 248 aa24.71■■□□□ 1.55
CCDC28B-203ENST00000461819 DLATP10515 647 aaKnown RBP24.71■■□□□ 1.55
CCDC28B-203ENST00000461819 RPL13P26373 211 aaKnown RBP24.71■■□□□ 1.55
CCDC28B-203ENST00000461819 PPP1R2P41236 205 aa24.71■■□□□ 1.55
CCDC28B-203ENST00000461819 MORC3Q14149 939 aa24.71■■□□□ 1.55
CCDC28B-203ENST00000461819 PSMD6Q15008 389 aa24.71■■□□□ 1.55
CCDC28B-203ENST00000461819 NFIL3Q16649 462 aa24.71■■□□□ 1.55
CCDC28B-203ENST00000461819 C9orf57Q5W0N0 161 aa24.71■■□□□ 1.55
CCDC28B-203ENST00000461819 LMBRD2Q68DH5 695 aaPredicted RBP24.71■■□□□ 1.55
CCDC28B-203ENST00000461819 ADSSL1Q8N142 457 aa24.71■■□□□ 1.55
CCDC28B-203ENST00000461819 TMEM174Q8WUU8 243 aa24.71■■□□□ 1.55
CCDC28B-203ENST00000461819 HLA-CQ95604 372 aa24.71■■□□□ 1.55
CCDC28B-203ENST00000461819 CCDC127Q96BQ5 260 aa24.71■■□□□ 1.55
CCDC28B-203ENST00000461819 ANKRD36BP1Q96IX9 119 aa24.71■■□□□ 1.55
CCDC28B-203ENST00000461819 PRDM6Q9NQX0 595 aa24.71■■□□□ 1.55
CCDC28B-203ENST00000461819 PPEF2O14830 753 aa24.7■■□□□ 1.54
CCDC28B-203ENST00000461819 TNNC2P02585 160 aa24.7■■□□□ 1.54
CCDC28B-203ENST00000461819 TNNI1P19237 187 aa24.7■■□□□ 1.54
CCDC28B-203ENST00000461819 CREMQ03060 361 aa24.7■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms