RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 ZNF558Q96NG5 402 aa14.11□□□□□ -0.15
VPS33A-202ENST00000451053 TSPAN18Q96SJ8 248 aa14.11□□□□□ -0.15
VPS33A-202ENST00000451053 CGRRF1Q99675 332 aa14.11□□□□□ -0.15
VPS33A-202ENST00000451053 TMEM175Q9BSA9 504 aa14.11□□□□□ -0.15
VPS33A-202ENST00000451053 SRRTQ9BXP5 876 aaKnown RBP14.11□□□□□ -0.15
VPS33A-202ENST00000451053 PRG3Q9Y2Y8 225 aaPredicted RBP14.11□□□□□ -0.15
VPS33A-202ENST00000451053 TRIOBPQ9H2D6 2365 aa14.11□□□□□ -0.15
VPS33A-202ENST00000451053 EPOPA6NHQ4 379 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 NRP1O14786 923 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 CYP3A5P20815 502 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 IGFBP6P24592 240 aaPredicted RBP14.1□□□□□ -0.15
VPS33A-202ENST00000451053 ALDH7A1P49419 539 aaKnown RBP14.1□□□□□ -0.15
VPS33A-202ENST00000451053 CLCNKBP51801 687 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 VAMP7P51809 220 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 C1orf220Q5T0J3 134 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 SCARA3Q6AZY7 606 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 INTS8Q75QN2 995 aaKnown RBP14.1□□□□□ -0.15
VPS33A-202ENST00000451053 FILIP1Q7Z7B0 1213 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 NT5DC4Q86YG4 428 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 WDR49Q8IV35 697 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 SLC39A11Q8N1S5 342 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 BEST2Q8NFU1 509 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 OR5B17Q8NGF7 314 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 TMC2Q8TDI7 906 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 ZNF516Q92618 1163 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 FNBP1Q96RU3 617 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 MTMR12Q9C0I1 747 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 TTYH1Q9H313 450 aaPredicted RBP14.1□□□□□ -0.15
VPS33A-202ENST00000451053 ZNF576Q9H609 170 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 AAASQ9NRG9 546 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 INTS13Q9NVM9 706 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 MARCH5Q9NX47 278 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 FAN1Q9Y2M0 1017 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 RWDD3Q9Y3V2 267 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 NFE2L3Q9Y4A8 694 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 PCDHB12Q9Y5F1 795 aa14.1□□□□□ -0.15
VPS33A-202ENST00000451053 C5orf67F2Z3F1 127 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 PODXLO00592 558 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 PPEF2O14830 753 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 XPOTO43592 962 aaKnown RBP14.09□□□□□ -0.15
VPS33A-202ENST00000451053 KIF4AO95239 1232 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 ALDH2P05091 517 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 ITGB1P05556 798 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 TMEM191BP0C7N4 346 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 TRIM49P0CI25 452 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 TRIM49CP0CI26 452 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 KRT13P13646 458 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 TNNI1P19237 187 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 LRPAP1P30533 357 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 BFSP1Q12934 665 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 NCAPHQ15003 741 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 UPP1Q16831 310 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 CCDC40Q4G0X9 1142 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 IRF2BP1Q8IU81 584 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 FAM114A1Q8IWE2 563 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 KLHL23Q8NBE8 558 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 FBXO22Q8NEZ5 403 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 ARNTL2Q8WYA1 636 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 ANP32BQ92688 251 aaKnown RBP14.09□□□□□ -0.15
VPS33A-202ENST00000451053 UROC1Q96N76 676 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 SAMD11Q96NU1 681 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 DPP3Q9NY33 737 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 SPG21Q9NZD8 308 aa14.09□□□□□ -0.15
VPS33A-202ENST00000451053 RANBP2P49792 3224 aaKnown RBP14.08□□□□□ -0.16
VPS33A-202ENST00000451053 TMEM265A0A087WTH1 108 aa14.08□□□□□ -0.16
VPS33A-202ENST00000451053 FGF18O76093 207 aa14.08□□□□□ -0.16
VPS33A-202ENST00000451053 MCCD1P59942 119 aaPredicted RBP14.08□□□□□ -0.16
VPS33A-202ENST00000451053 CLDN10P78369 228 aa14.08□□□□□ -0.16
VPS33A-202ENST00000451053 HSP90AA4PQ58FG1 418 aa14.08□□□□□ -0.16
VPS33A-202ENST00000451053 C9orf57Q5W0N0 161 aa14.08□□□□□ -0.16
VPS33A-202ENST00000451053 CD300LGQ6UXG3 332 aa14.08□□□□□ -0.16
VPS33A-202ENST00000451053 C1orf127Q8N9H9 656 aa14.08□□□□□ -0.16
VPS33A-202ENST00000451053 C3orf58Q8NDZ4 430 aa14.08□□□□□ -0.16
VPS33A-202ENST00000451053 ANKRD20A12PQ8NF67 263 aa14.08□□□□□ -0.16
VPS33A-202ENST00000451053 CXorf38Q8TB03 319 aa14.08□□□□□ -0.16
VPS33A-202ENST00000451053 HASPINQ8TF76 798 aa14.08□□□□□ -0.16
VPS33A-202ENST00000451053 CACTINQ8WUQ7 758 aaKnown RBP14.08□□□□□ -0.16
VPS33A-202ENST00000451053 IGSF21Q96ID5 467 aa14.08□□□□□ -0.16
VPS33A-202ENST00000451053 ANKRD36BP1Q96IX9 119 aa14.08□□□□□ -0.16
VPS33A-202ENST00000451053 PLVAPQ9BX97 442 aa14.08□□□□□ -0.16
VPS33A-202ENST00000451053 THAP9Q9H5L6 903 aa14.08□□□□□ -0.16
VPS33A-202ENST00000451053 SAMSN1Q9NSI8 373 aaKnown RBP14.08□□□□□ -0.16
VPS33A-202ENST00000451053 MAGEC2Q9UBF1 373 aaPredicted RBP14.08□□□□□ -0.16
VPS33A-202ENST00000451053 ARMCX3Q9UH62 379 aaPredicted RBP14.08□□□□□ -0.16
VPS33A-202ENST00000451053 COL4A4P53420 1690 aaPredicted RBP14.07□□□□□ -0.16
VPS33A-202ENST00000451053 ANO9A1A5B4 782 aa14.07□□□□□ -0.16
VPS33A-202ENST00000451053 RFXAPO00287 272 aa14.07□□□□□ -0.16
VPS33A-202ENST00000451053 TNNC2P02585 160 aa14.07□□□□□ -0.16
VPS33A-202ENST00000451053 ITGB3P05106 788 aa14.07□□□□□ -0.16
VPS33A-202ENST00000451053 RB1P06400 928 aa14.07□□□□□ -0.16
VPS33A-202ENST00000451053 RPL9P32969 192 aaKnown RBP14.07□□□□□ -0.16
VPS33A-202ENST00000451053 PPM1AP35813 382 aa14.07□□□□□ -0.16
VPS33A-202ENST00000451053 MARSP56192 900 aaKnown RBP14.07□□□□□ -0.16
VPS33A-202ENST00000451053 ENPEPQ07075 957 aa14.07□□□□□ -0.16
VPS33A-202ENST00000451053 PPP3CAQ08209 521 aa14.07□□□□□ -0.16
VPS33A-202ENST00000451053 DUOXA2Q1HG44 320 aa14.07□□□□□ -0.16
VPS33A-202ENST00000451053 DCAF17Q5H9S7 520 aaPredicted RBP14.07□□□□□ -0.16
VPS33A-202ENST00000451053 ZNF697Q5TEC3 545 aa14.07□□□□□ -0.16
VPS33A-202ENST00000451053 TDRD10Q5VZ19 366 aaKnown RBP14.07□□□□□ -0.16
VPS33A-202ENST00000451053 TRAPPC11Q7Z392 1133 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms