RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 PLA2G4FQ68DD2 849 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 SLC39A4Q6P5W5 647 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 C15orf39Q6ZRI6 1047 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 RELL1Q8IUW5 271 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 CPXCR1Q8N123 301 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 GBP7Q8N8V2 638 aaPredicted RBP12.04□□□□□ -0.48
USP4-205ENST00000431357 CCDC89Q8N998 374 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 CCDC63Q8NA47 563 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 DDX27Q96GQ7 796 aaKnown RBP12.04□□□□□ -0.48
USP4-205ENST00000431357 VCPIP1Q96JH7 1222 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 SCLT1Q96NL6 688 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 SH2D3AQ9BRG2 576 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 KIAA1683Q9H0B3 1180 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 RAVER2Q9HCJ3 691 aaKnown RBP12.04□□□□□ -0.48
USP4-205ENST00000431357 CD248Q9HCU0 757 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 PXMP2Q9NR77 195 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 TOPORSQ9NS56 1045 aaPredicted RBP12.04□□□□□ -0.48
USP4-205ENST00000431357 CHST7Q9NS84 486 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.04□□□□□ -0.48
USP4-205ENST00000431357 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.04□□□□□ -0.48
USP4-205ENST00000431357 LGALS13Q9UHV8 139 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 USP15Q9Y4E8 981 aaPredicted RBP12.04□□□□□ -0.48
USP4-205ENST00000431357 CTDP1Q9Y5B0 961 aaPredicted RBP12.04□□□□□ -0.48
USP4-205ENST00000431357 ACTL7BQ9Y614 415 aa12.04□□□□□ -0.48
USP4-205ENST00000431357 BRWD3Q6RI45 1802 aa12.03□□□□□ -0.48
USP4-205ENST00000431357 RGPD3A6NKT7 1758 aaPredicted RBP12.03□□□□□ -0.48
USP4-205ENST00000431357 RGPD4Q7Z3J3 1758 aa12.03□□□□□ -0.48
USP4-205ENST00000431357 MROH7Q68CQ1 1323 aa12.03□□□□□ -0.48
USP4-205ENST00000431357 MYPNQ86TC9 1320 aa12.03□□□□□ -0.48
USP4-205ENST00000431357 TMEM120BA0PK00 339 aa12.03□□□□□ -0.48
USP4-205ENST00000431357 ATP9AO75110 1047 aa12.03□□□□□ -0.48
USP4-205ENST00000431357 SUN1O94901 812 aa12.03□□□□□ -0.48
USP4-205ENST00000431357 ACSL3O95573 720 aa12.03□□□□□ -0.48
USP4-205ENST00000431357 OAS1P00973 400 aaKnown RBP12.03□□□□□ -0.48
USP4-205ENST00000431357 CYP1A1P04798 512 aaPredicted RBP12.03□□□□□ -0.48
USP4-205ENST00000431357 NSFP46459 744 aaKnown RBP12.03□□□□□ -0.48
USP4-205ENST00000431357 IFNAR2P48551 515 aa12.03□□□□□ -0.48
USP4-205ENST00000431357 ANO5Q75V66 913 aa12.03□□□□□ -0.48
USP4-205ENST00000431357 NLRX1Q86UT6 975 aa12.03□□□□□ -0.48
USP4-205ENST00000431357 RHOT1Q8IXI2 618 aa12.03□□□□□ -0.48
USP4-205ENST00000431357 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.03□□□□□ -0.48
USP4-205ENST00000431357 CKAP2Q8WWK9 683 aa12.03□□□□□ -0.48
USP4-205ENST00000431357 ATP6V0A1Q93050 837 aa12.03□□□□□ -0.48
USP4-205ENST00000431357 ITFG2Q969R8 447 aa12.03□□□□□ -0.48
USP4-205ENST00000431357 GPRASP2Q96D09 838 aa12.03□□□□□ -0.48
USP4-205ENST00000431357 RMDN3Q96TC7 470 aa12.03□□□□□ -0.48
USP4-205ENST00000431357 DDX23Q9BUQ8 820 aaKnown RBP12.03□□□□□ -0.48
USP4-205ENST00000431357 MRPL47Q9HD33 250 aaKnown RBP12.03□□□□□ -0.48
USP4-205ENST00000431357 PGAP2Q9UHJ9 254 aa12.03□□□□□ -0.48
USP4-205ENST00000431357 TPX2Q9ULW0 747 aaKnown RBP12.03□□□□□ -0.48
USP4-205ENST00000431357 O00370 1275 aa12.02□□□□□ -0.48
USP4-205ENST00000431357 THAP12O43422 761 aa12.02□□□□□ -0.48
USP4-205ENST00000431357 EXTL3O43909 919 aa12.02□□□□□ -0.48
USP4-205ENST00000431357 ZBED4O75132 1171 aa12.02□□□□□ -0.48
USP4-205ENST00000431357 DGAT1O75907 488 aa12.02□□□□□ -0.48
USP4-205ENST00000431357 APBA3O96018 575 aa12.02□□□□□ -0.48
USP4-205ENST00000431357 CHKAP35790 457 aa12.02□□□□□ -0.48
USP4-205ENST00000431357 ADCY8P40145 1251 aa12.02□□□□□ -0.48
USP4-205ENST00000431357 CETN2P41208 172 aa12.02□□□□□ -0.48
USP4-205ENST00000431357 CLDN10P78369 228 aa12.02□□□□□ -0.48
USP4-205ENST00000431357 ELF3P78545 371 aaPredicted RBP12.02□□□□□ -0.48
USP4-205ENST00000431357 LMNB2Q03252 620 aa12.02□□□□□ -0.48
USP4-205ENST00000431357 RIPK1Q13546 671 aa12.02□□□□□ -0.48
USP4-205ENST00000431357 STAT4Q14765 748 aa12.02□□□□□ -0.48
USP4-205ENST00000431357 ARHGEF16Q5VV41 709 aa12.02□□□□□ -0.48
USP4-205ENST00000431357 VSTM1Q6UX27 236 aa12.02□□□□□ -0.48
USP4-205ENST00000431357 ZNF365Q70YC5 407 aa12.02□□□□□ -0.48
USP4-205ENST00000431357 RTKN2Q8IZC4 609 aa12.02□□□□□ -0.48
USP4-205ENST00000431357 RIBC1Q8N443 379 aaPredicted RBP12.02□□□□□ -0.48
USP4-205ENST00000431357 CCHCR1Q8TD31 782 aa12.02□□□□□ -0.48
USP4-205ENST00000431357 CEP170P1Q96L14 293 aa12.02□□□□□ -0.48
USP4-205ENST00000431357 IFT74Q96LB3 600 aa12.02□□□□□ -0.48
USP4-205ENST00000431357 HNRNPDLO14979 420 aaKnown RBP12.02□□□□□ -0.49
USP4-205ENST00000431357 RAD17O75943 681 aa12.02□□□□□ -0.49
USP4-205ENST00000431357 RRM1P23921 792 aa12.02□□□□□ -0.49
USP4-205ENST00000431357 CCND2P30279 289 aa12.02□□□□□ -0.49
USP4-205ENST00000431357 IRX1P78414 480 aaPredicted RBP12.02□□□□□ -0.49
USP4-205ENST00000431357 KLF1Q13351 362 aaPredicted RBP12.02□□□□□ -0.49
USP4-205ENST00000431357 PSMD6Q15008 389 aa12.02□□□□□ -0.49
USP4-205ENST00000431357 CCDC38Q502W7 563 aa12.02□□□□□ -0.49
USP4-205ENST00000431357 ARHGEF18Q6ZSZ5 1173 aa12.02□□□□□ -0.49
USP4-205ENST00000431357 KATNAL2Q8IYT4 538 aa12.02□□□□□ -0.49
USP4-205ENST00000431357 AGBL3Q8NEM8 1001 aa12.02□□□□□ -0.49
USP4-205ENST00000431357 BSNDQ8WZ55 320 aa12.02□□□□□ -0.49
USP4-205ENST00000431357 KIFC3Q9BVG8 833 aa12.02□□□□□ -0.49
USP4-205ENST00000431357 VPS33BQ9H267 617 aa12.02□□□□□ -0.49
USP4-205ENST00000431357 NINJ2Q9NZG7 142 aa12.02□□□□□ -0.49
USP4-205ENST00000431357 NEU2Q9Y3R4 380 aa12.02□□□□□ -0.49
USP4-205ENST00000431357 SCINQ9Y6U3 715 aa12.02□□□□□ -0.49
USP4-205ENST00000431357 TESPA1A2RU30 521 aaPredicted RBP12.01□□□□□ -0.49
USP4-205ENST00000431357 TCP11X1B4DZS4 312 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 CDH16O75309 829 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 ABHD2P08910 425 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 EZRP15311 586 aaKnown RBP12.01□□□□□ -0.49
USP4-205ENST00000431357 NEDD9Q14511 834 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 KYNUQ16719 465 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 TBC1D10BQ4KMP7 808 aaPredicted RBP12.01□□□□□ -0.49
USP4-205ENST00000431357 HIBCHQ6NVY1 386 aaPredicted RBP12.01□□□□□ -0.49
USP4-205ENST00000431357 PPP1R21Q6ZMI0 780 aa12.01□□□□□ -0.49
USP4-205ENST00000431357 MON1BQ7L1V2 547 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms